miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20708 5' -67.2 NC_004688.1 + 52033 0.75 0.08094
Target:  5'- gUGGCCGgacacaucUGCCucgucgccggcGCCGGGGCCaucgCCACCa -3'
miRNA:   3'- -ACCGGC--------ACGG-----------CGGCCCCGGa---GGUGGc -5'
20708 5' -67.2 NC_004688.1 + 66613 0.75 0.089533
Target:  5'- cGGCCGcaaGCaGUCGGGGCCggcgaugCCGCCGg -3'
miRNA:   3'- aCCGGCa--CGgCGGCCCCGGa------GGUGGC- -5'
20708 5' -67.2 NC_004688.1 + 86663 0.73 0.106688
Target:  5'- gGGaCCGuUGCCGgugcCCGGGGCC-CCGCCc -3'
miRNA:   3'- aCC-GGC-ACGGC----GGCCCCGGaGGUGGc -5'
20708 5' -67.2 NC_004688.1 + 79944 0.72 0.146979
Target:  5'- aGGCCGgGCCcgcccggaucGaCCGGGGUCaCCACCGg -3'
miRNA:   3'- aCCGGCaCGG----------C-GGCCCCGGaGGUGGC- -5'
20708 5' -67.2 NC_004688.1 + 84477 0.71 0.150597
Target:  5'- aGGCCGccggaGCUGCCGGaccGGCCaUCGCCGa -3'
miRNA:   3'- aCCGGCa----CGGCGGCC---CCGGaGGUGGC- -5'
20708 5' -67.2 NC_004688.1 + 84933 0.71 0.154294
Target:  5'- cUGGCCG-GUCGCgaGcGGGCCacCCACCGa -3'
miRNA:   3'- -ACCGGCaCGGCGg-C-CCCGGa-GGUGGC- -5'
20708 5' -67.2 NC_004688.1 + 82421 0.7 0.174042
Target:  5'- gGGcCCGUcGCUgaagaagaacguGCCGGGGCCguacaCCACCa -3'
miRNA:   3'- aCC-GGCA-CGG------------CGGCCCCGGa----GGUGGc -5'
20708 5' -67.2 NC_004688.1 + 57435 0.7 0.191432
Target:  5'- -cGCCGUGCCGCCccGGGGuCCUguUCugCa -3'
miRNA:   3'- acCGGCACGGCGG--CCCC-GGA--GGugGc -5'
20708 5' -67.2 NC_004688.1 + 65904 0.7 0.191432
Target:  5'- gGGCuCGUa-UGCCGGGGCgUCCACUa -3'
miRNA:   3'- aCCG-GCAcgGCGGCCCCGgAGGUGGc -5'
20708 5' -67.2 NC_004688.1 + 85122 0.7 0.200687
Target:  5'- -cGCC---CCGCCGGGGCCgccuugggggCCGCCGg -3'
miRNA:   3'- acCGGcacGGCGGCCCCGGa---------GGUGGC- -5'
20708 5' -67.2 NC_004688.1 + 28518 0.69 0.23081
Target:  5'- cGGCCuUGgCGC--GGGCCUUCACCGu -3'
miRNA:   3'- aCCGGcACgGCGgcCCCGGAGGUGGC- -5'
20708 5' -67.2 NC_004688.1 + 106080 0.69 0.23081
Target:  5'- aGGCCG-GCCaacuCCaGGGCCUCCAggaUCGa -3'
miRNA:   3'- aCCGGCaCGGc---GGcCCCGGAGGU---GGC- -5'
20708 5' -67.2 NC_004688.1 + 73505 0.68 0.252948
Target:  5'- cUGGCCGaccagaUGCCGCCcuccacguaGGuGCCUgCCGCCa -3'
miRNA:   3'- -ACCGGC------ACGGCGG---------CCcCGGA-GGUGGc -5'
20708 5' -67.2 NC_004688.1 + 92661 0.68 0.252948
Target:  5'- gGGcCCGUGgCGCCGGuGCCgaCCAUCa -3'
miRNA:   3'- aCC-GGCACgGCGGCCcCGGa-GGUGGc -5'
20708 5' -67.2 NC_004688.1 + 71176 0.68 0.258164
Target:  5'- gGGCCGU-CCGgCGggguugguuucucGGGCCUUCGCCc -3'
miRNA:   3'- aCCGGCAcGGCgGC-------------CCCGGAGGUGGc -5'
20708 5' -67.2 NC_004688.1 + 85060 0.68 0.265255
Target:  5'- gGGUCGaUGCCGCCaccccgggcgaagucGGGCUUCUGCUGg -3'
miRNA:   3'- aCCGGC-ACGGCGGc--------------CCCGGAGGUGGC- -5'
20708 5' -67.2 NC_004688.1 + 45402 0.68 0.268859
Target:  5'- aGGCCGUGCCaCgGGuGGCcCUCCGggaugcggacguauCCGu -3'
miRNA:   3'- aCCGGCACGGcGgCC-CCG-GAGGU--------------GGC- -5'
20708 5' -67.2 NC_004688.1 + 50052 0.68 0.270675
Target:  5'- cUGGCCGcggcgGUCGCCaauGGuccaGGCC-CCGCCGg -3'
miRNA:   3'- -ACCGGCa----CGGCGG---CC----CCGGaGGUGGC- -5'
20708 5' -67.2 NC_004688.1 + 84279 0.68 0.276185
Target:  5'- cGGCCGUuCCGCCaagggcGGGCUUggccugagaaaggCCGCCGa -3'
miRNA:   3'- aCCGGCAcGGCGGc-----CCCGGA-------------GGUGGC- -5'
20708 5' -67.2 NC_004688.1 + 23412 0.67 0.283041
Target:  5'- cGGaaG-GUCGCCGGGGCUcaUCCAgCa -3'
miRNA:   3'- aCCggCaCGGCGGCCCCGG--AGGUgGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.