Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20708 | 5' | -67.2 | NC_004688.1 | + | 15351 | 0.66 | 0.332664 |
Target: 5'- cGGCCagggGCCGCCGGaGuggcgcaacccccagGCC-CCGCCa -3' miRNA: 3'- aCCGGca--CGGCGGCC-C---------------CGGaGGUGGc -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 23412 | 0.67 | 0.283041 |
Target: 5'- cGGaaG-GUCGCCGGGGCUcaUCCAgCa -3' miRNA: 3'- aCCggCaCGGCGGCCCCGG--AGGUgGc -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 25609 | 0.66 | 0.362036 |
Target: 5'- cGGCCaGcGCCGCCuGGugcucuuucuccuccGCCUCCGCgGc -3' miRNA: 3'- aCCGG-CaCGGCGGcCC---------------CGGAGGUGgC- -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 28518 | 0.69 | 0.23081 |
Target: 5'- cGGCCuUGgCGC--GGGCCUUCACCGu -3' miRNA: 3'- aCCGGcACgGCGgcCCCGGAGGUGGC- -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 32315 | 0.66 | 0.365832 |
Target: 5'- cGGCCuUGCUGaaGGccgauucgaugguGGCCUCgACCGa -3' miRNA: 3'- aCCGGcACGGCggCC-------------CCGGAGgUGGC- -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 35353 | 0.66 | 0.322806 |
Target: 5'- aUGGCCGaguucagGUCGCuCGGGGUC-CaggaGCCGa -3' miRNA: 3'- -ACCGGCa------CGGCG-GCCCCGGaGg---UGGC- -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 45402 | 0.68 | 0.268859 |
Target: 5'- aGGCCGUGCCaCgGGuGGCcCUCCGggaugcggacguauCCGu -3' miRNA: 3'- aCCGGCACGGcGgCC-CCG-GAGGU--------------GGC- -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 49851 | 0.66 | 0.329825 |
Target: 5'- aGGCCauGUGaCCuccgGCCGaGGCC-CCGCCGa -3' miRNA: 3'- aCCGG--CAC-GG----CGGCcCCGGaGGUGGC- -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 50052 | 0.68 | 0.270675 |
Target: 5'- cUGGCCGcggcgGUCGCCaauGGuccaGGCC-CCGCCGg -3' miRNA: 3'- -ACCGGCa----CGGCGG---CC----CCGGaGGUGGC- -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 52033 | 0.75 | 0.08094 |
Target: 5'- gUGGCCGgacacaucUGCCucgucgccggcGCCGGGGCCaucgCCACCa -3' miRNA: 3'- -ACCGGC--------ACGG-----------CGGCCCCGGa---GGUGGc -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 57435 | 0.7 | 0.191432 |
Target: 5'- -cGCCGUGCCGCCccGGGGuCCUguUCugCa -3' miRNA: 3'- acCGGCACGGCGG--CCCC-GGA--GGugGc -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 65904 | 0.7 | 0.191432 |
Target: 5'- gGGCuCGUa-UGCCGGGGCgUCCACUa -3' miRNA: 3'- aCCG-GCAcgGCGGCCCCGgAGGUGGc -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 66613 | 0.75 | 0.089533 |
Target: 5'- cGGCCGcaaGCaGUCGGGGCCggcgaugCCGCCGg -3' miRNA: 3'- aCCGGCa--CGgCGGCCCCGGa------GGUGGC- -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 71176 | 0.68 | 0.258164 |
Target: 5'- gGGCCGU-CCGgCGggguugguuucucGGGCCUUCGCCc -3' miRNA: 3'- aCCGGCAcGGCgGC-------------CCCGGAGGUGGc -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 73505 | 0.68 | 0.252948 |
Target: 5'- cUGGCCGaccagaUGCCGCCcuccacguaGGuGCCUgCCGCCa -3' miRNA: 3'- -ACCGGC------ACGGCGG---------CCcCGGA-GGUGGc -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 76520 | 0.67 | 0.289389 |
Target: 5'- cUGGCCGgucuCCGCgCGGGacuCCUCCACa- -3' miRNA: 3'- -ACCGGCac--GGCG-GCCCc--GGAGGUGgc -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 76976 | 0.66 | 0.329825 |
Target: 5'- aGGCCGccaacgagcccuUGCCGCCGuuaccGGCa-CCACCa -3' miRNA: 3'- aCCGGC------------ACGGCGGCc----CCGgaGGUGGc -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 79813 | 0.66 | 0.329825 |
Target: 5'- aGGgUGUaGCCGuuGGuGCCcCCGCCGa -3' miRNA: 3'- aCCgGCA-CGGCggCCcCGGaGGUGGC- -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 79944 | 0.72 | 0.146979 |
Target: 5'- aGGCCGgGCCcgcccggaucGaCCGGGGUCaCCACCGg -3' miRNA: 3'- aCCGGCaCGG----------C-GGCCCCGGaGGUGGC- -5' |
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20708 | 5' | -67.2 | NC_004688.1 | + | 82421 | 0.7 | 0.174042 |
Target: 5'- gGGcCCGUcGCUgaagaagaacguGCCGGGGCCguacaCCACCa -3' miRNA: 3'- aCC-GGCA-CGG------------CGGCCCCGGa----GGUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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