miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20712 5' -57.8 NC_004688.1 + 30773 0.66 0.764039
Target:  5'- cGGCCAGCGcaugGCCauAGGG--GCAUUCGg- -3'
miRNA:   3'- -CCGGUCGU----UGG--UCCCagCGUAGGCaa -5'
20712 5' -57.8 NC_004688.1 + 105637 0.66 0.754323
Target:  5'- aGCCAGUAGCCGagcagguacGGGUCGaccggaagGUCCGc- -3'
miRNA:   3'- cCGGUCGUUGGU---------CCCAGCg-------UAGGCaa -5'
20712 5' -57.8 NC_004688.1 + 56571 0.67 0.683731
Target:  5'- uGCCcgcGGCGGCCGGGGaacaccaggGCGUCCGg- -3'
miRNA:   3'- cCGG---UCGUUGGUCCCag-------CGUAGGCaa -5'
20712 5' -57.8 NC_004688.1 + 81149 0.67 0.652621
Target:  5'- cGCCAGCAGC--GGGUCGUugcCCGg- -3'
miRNA:   3'- cCGGUCGUUGguCCCAGCGua-GGCaa -5'
20712 5' -57.8 NC_004688.1 + 21062 0.68 0.610943
Target:  5'- cGCCAGCGAugUCGGGGcCGCGccagCCGg- -3'
miRNA:   3'- cCGGUCGUU--GGUCCCaGCGUa---GGCaa -5'
20712 5' -57.8 NC_004688.1 + 63913 0.68 0.600544
Target:  5'- uGGCCAGCAagaccgACCAGcucGG-CGCcAUCCGg- -3'
miRNA:   3'- -CCGGUCGU------UGGUC---CCaGCG-UAGGCaa -5'
20712 5' -57.8 NC_004688.1 + 85395 0.7 0.52883
Target:  5'- aGGCCAGUuggugacgaacACCGGGGUUGCccCCGa- -3'
miRNA:   3'- -CCGGUCGu----------UGGUCCCAGCGuaGGCaa -5'
20712 5' -57.8 NC_004688.1 + 85262 0.7 0.518819
Target:  5'- uGGCCuGCGGagauCCGGGGUUGCcgaAUCCGc- -3'
miRNA:   3'- -CCGGuCGUU----GGUCCCAGCG---UAGGCaa -5'
20712 5' -57.8 NC_004688.1 + 20982 0.7 0.518819
Target:  5'- cGGCUcGCcgccuGGCCGGGGUCcGCuUCCGUg -3'
miRNA:   3'- -CCGGuCG-----UUGGUCCCAG-CGuAGGCAa -5'
20712 5' -57.8 NC_004688.1 + 69392 0.7 0.518819
Target:  5'- cGGaCUGGCGACCuGGGUUGUAccggCCGUg -3'
miRNA:   3'- -CC-GGUCGUUGGuCCCAGCGUa---GGCAa -5'
20712 5' -57.8 NC_004688.1 + 55068 0.71 0.451127
Target:  5'- cGGCUAGCGGcgcucgacacCCGGGGUuggCGCAUCgGUg -3'
miRNA:   3'- -CCGGUCGUU----------GGUCCCA---GCGUAGgCAa -5'
20712 5' -57.8 NC_004688.1 + 56401 0.72 0.405857
Target:  5'- uGGCCAGCGaggcgcagguguGCCGGaGGUCGUgcggggugAUCCGg- -3'
miRNA:   3'- -CCGGUCGU------------UGGUC-CCAGCG--------UAGGCaa -5'
20712 5' -57.8 NC_004688.1 + 107081 0.72 0.397151
Target:  5'- aGGCCacGGCAugGCCAGGGUuucUGCGacccuUCCGUUg -3'
miRNA:   3'- -CCGG--UCGU--UGGUCCCA---GCGU-----AGGCAA- -5'
20712 5' -57.8 NC_004688.1 + 68861 0.73 0.339678
Target:  5'- cGGCCugGGCGG-CGGGGUCGCcgGUCCGg- -3'
miRNA:   3'- -CCGG--UCGUUgGUCCCAGCG--UAGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.