miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20718 3' -54.9 NC_004688.1 + 66708 0.66 0.916717
Target:  5'- uUCCCGGgGCCcugacgGGGUugccguacagaAUCACCgcgACGAu -3'
miRNA:   3'- gAGGGCUgCGG------CCUA-----------UAGUGGa--UGCU- -5'
20718 3' -54.9 NC_004688.1 + 45152 0.66 0.910732
Target:  5'- aCUCCuCGgggcaACGCCGGG-GUCGCCcgGCGc -3'
miRNA:   3'- -GAGG-GC-----UGCGGCCUaUAGUGGa-UGCu -5'
20718 3' -54.9 NC_004688.1 + 63195 0.66 0.910732
Target:  5'- -cCCCGGCgacgGCCGGAaagaaUGUCAgCgCUGCGGc -3'
miRNA:   3'- gaGGGCUG----CGGCCU-----AUAGU-G-GAUGCU- -5'
20718 3' -54.9 NC_004688.1 + 56384 0.66 0.904502
Target:  5'- --gUUGGCGCCGGAggagAUgGCCaGCGAg -3'
miRNA:   3'- gagGGCUGCGGCCUa---UAgUGGaUGCU- -5'
20718 3' -54.9 NC_004688.1 + 64094 0.66 0.89803
Target:  5'- uUCCCGAucacuCGCgGGA--UCGCCcgGCGGg -3'
miRNA:   3'- gAGGGCU-----GCGgCCUauAGUGGa-UGCU- -5'
20718 3' -54.9 NC_004688.1 + 79859 0.66 0.89803
Target:  5'- gUCgUCGGCGuuGGcgAUCACC-ACGGg -3'
miRNA:   3'- gAG-GGCUGCggCCuaUAGUGGaUGCU- -5'
20718 3' -54.9 NC_004688.1 + 86802 0.66 0.891318
Target:  5'- aUCuuGACGUCGGAUuggcCACCgaucCGAu -3'
miRNA:   3'- gAGggCUGCGGCCUAua--GUGGau--GCU- -5'
20718 3' -54.9 NC_004688.1 + 74065 0.67 0.885075
Target:  5'- -aCCCGAaGCCGGugggcuuguugaccGUCACCUGCu- -3'
miRNA:   3'- gaGGGCUgCGGCCua------------UAGUGGAUGcu -5'
20718 3' -54.9 NC_004688.1 + 9509 0.67 0.877191
Target:  5'- gCUCuCUGACGCCGacaagGUCGCCaucgUACGGg -3'
miRNA:   3'- -GAG-GGCUGCGGCcua--UAGUGG----AUGCU- -5'
20718 3' -54.9 NC_004688.1 + 85169 0.67 0.853521
Target:  5'- gUCCCGAuuCGCC-GAUggcguacgccacgAUCGCCUGCGc -3'
miRNA:   3'- gAGGGCU--GCGGcCUA-------------UAGUGGAUGCu -5'
20718 3' -54.9 NC_004688.1 + 75313 0.68 0.838015
Target:  5'- cCUCCauuCGCCGGA--UCGCCaucgUGCGAa -3'
miRNA:   3'- -GAGGgcuGCGGCCUauAGUGG----AUGCU- -5'
20718 3' -54.9 NC_004688.1 + 37045 0.68 0.802244
Target:  5'- uUCCCGgauguugGCGCCGGGcccCACCU-CGAa -3'
miRNA:   3'- gAGGGC-------UGCGGCCUauaGUGGAuGCU- -5'
20718 3' -54.9 NC_004688.1 + 82610 0.69 0.765724
Target:  5'- --gCCGACGCCGcGGUAguccUCGCCcacgUGCGAc -3'
miRNA:   3'- gagGGCUGCGGC-CUAU----AGUGG----AUGCU- -5'
20718 3' -54.9 NC_004688.1 + 74416 0.69 0.765724
Target:  5'- gCUCC--GCGCCGGAcAUUccaACCUGCGGg -3'
miRNA:   3'- -GAGGgcUGCGGCCUaUAG---UGGAUGCU- -5'
20718 3' -54.9 NC_004688.1 + 17973 0.69 0.756036
Target:  5'- aUCCCGACGCCagcGGAgaaAUCcACCUggGCGu -3'
miRNA:   3'- gAGGGCUGCGG---CCUa--UAG-UGGA--UGCu -5'
20718 3' -54.9 NC_004688.1 + 99951 0.7 0.736329
Target:  5'- gCUgCCGGCGCUGGuggcaGUgACCUGCGu -3'
miRNA:   3'- -GAgGGCUGCGGCCua---UAgUGGAUGCu -5'
20718 3' -54.9 NC_004688.1 + 16848 0.7 0.714222
Target:  5'- -cCCCGugGCCGGAUucaucccccgcCACCUcuacGCGGc -3'
miRNA:   3'- gaGGGCugCGGCCUAua---------GUGGA----UGCU- -5'
20718 3' -54.9 NC_004688.1 + 61146 0.7 0.70609
Target:  5'- gUCUggCGGCgGCCGGAUGaCAUCUACGGa -3'
miRNA:   3'- gAGG--GCUG-CGGCCUAUaGUGGAUGCU- -5'
20718 3' -54.9 NC_004688.1 + 98607 0.71 0.675267
Target:  5'- -aCCCGAUGCCGGGcugCugCUcgACGAc -3'
miRNA:   3'- gaGGGCUGCGGCCUauaGugGA--UGCU- -5'
20718 3' -54.9 NC_004688.1 + 72539 0.71 0.664907
Target:  5'- aUCCCGGacgcgcUGCCGGAUuucugCACCgACGAa -3'
miRNA:   3'- gAGGGCU------GCGGCCUAua---GUGGaUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.