miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20732 3' -57.9 NC_004688.1 + 65156 0.75 0.269718
Target:  5'- aACCGC-ACAgACCCCGCGcACGCCUAGa -3'
miRNA:   3'- cUGGUGcUGU-UGGGGCGU-UGCGGGUC- -5'
20732 3' -57.9 NC_004688.1 + 56694 0.75 0.28284
Target:  5'- -cUCACGAUGGCCCCGUAaagcucccagauGCGCCCAc -3'
miRNA:   3'- cuGGUGCUGUUGGGGCGU------------UGCGGGUc -5'
20732 3' -57.9 NC_004688.1 + 77225 0.75 0.289589
Target:  5'- cACCAgGACcGCCCaCGCcgccAGCGCCCGGg -3'
miRNA:   3'- cUGGUgCUGuUGGG-GCG----UUGCGGGUC- -5'
20732 3' -57.9 NC_004688.1 + 71899 0.75 0.296463
Target:  5'- gGAUaACGACGGCCCCgGCAAC-CCCGGa -3'
miRNA:   3'- -CUGgUGCUGUUGGGG-CGUUGcGGGUC- -5'
20732 3' -57.9 NC_004688.1 + 80834 0.74 0.310589
Target:  5'- uACCGCGACAAUuaCCCGCcACGCCUc- -3'
miRNA:   3'- cUGGUGCUGUUG--GGGCGuUGCGGGuc -5'
20732 3' -57.9 NC_004688.1 + 49851 0.74 0.332729
Target:  5'- aGGCCAUGugAccuccggccgagGCCCCGcCGACGgCCAGg -3'
miRNA:   3'- -CUGGUGCugU------------UGGGGC-GUUGCgGGUC- -5'
20732 3' -57.9 NC_004688.1 + 63185 0.73 0.388779
Target:  5'- cGACUACGG--ACCCCgGCGACGgCCGGa -3'
miRNA:   3'- -CUGGUGCUguUGGGG-CGUUGCgGGUC- -5'
20732 3' -57.9 NC_004688.1 + 103488 0.73 0.388779
Target:  5'- uGGCCcccggGCGAUcGCCgUGCAugGCCCAGu -3'
miRNA:   3'- -CUGG-----UGCUGuUGGgGCGUugCGGGUC- -5'
20732 3' -57.9 NC_004688.1 + 84742 0.72 0.405893
Target:  5'- uGCCGCucCAcCgCCCGCGGCGCCCAa -3'
miRNA:   3'- cUGGUGcuGUuG-GGGCGUUGCGGGUc -5'
20732 3' -57.9 NC_004688.1 + 94509 0.72 0.43153
Target:  5'- uGAUCGcCGACAACCCCGacgucacCGACGUCUGGg -3'
miRNA:   3'- -CUGGU-GCUGUUGGGGC-------GUUGCGGGUC- -5'
20732 3' -57.9 NC_004688.1 + 75843 0.72 0.43153
Target:  5'- cGACUcgGCGACAGgcccaucgcguugUCCCGCAACGCCUc- -3'
miRNA:   3'- -CUGG--UGCUGUU-------------GGGGCGUUGCGGGuc -5'
20732 3' -57.9 NC_004688.1 + 106914 0.72 0.441499
Target:  5'- cGAUCACGACAAgauCCCCGUGAuCGCCa-- -3'
miRNA:   3'- -CUGGUGCUGUU---GGGGCGUU-GCGGguc -5'
20732 3' -57.9 NC_004688.1 + 56557 0.7 0.50778
Target:  5'- cGCCGuuggUGAUGugCCCGCGGCGgCCGGg -3'
miRNA:   3'- cUGGU----GCUGUugGGGCGUUGCgGGUC- -5'
20732 3' -57.9 NC_004688.1 + 84518 0.7 0.517603
Target:  5'- -cCCAUGGC-GCCCUggaugGCAGCGCCCGc -3'
miRNA:   3'- cuGGUGCUGuUGGGG-----CGUUGCGGGUc -5'
20732 3' -57.9 NC_004688.1 + 14157 0.7 0.526507
Target:  5'- cGGCCGCGAUAggcACCCCcggcaggGCGAUGCaCCAc -3'
miRNA:   3'- -CUGGUGCUGU---UGGGG-------CGUUGCG-GGUc -5'
20732 3' -57.9 NC_004688.1 + 99728 0.7 0.547499
Target:  5'- -cCCACGACAcgcugcgaggcgACCUCGguCAgcACGCCCAGg -3'
miRNA:   3'- cuGGUGCUGU------------UGGGGC--GU--UGCGGGUC- -5'
20732 3' -57.9 NC_004688.1 + 90023 0.69 0.557588
Target:  5'- aGGCCGCGcCAguccgcACCCuCGCggUGCCaCAGa -3'
miRNA:   3'- -CUGGUGCuGU------UGGG-GCGuuGCGG-GUC- -5'
20732 3' -57.9 NC_004688.1 + 38050 0.69 0.567731
Target:  5'- gGACCAgcaGAUcuucuuGGCCuCCGCGGCGCCCu- -3'
miRNA:   3'- -CUGGUg--CUG------UUGG-GGCGUUGCGGGuc -5'
20732 3' -57.9 NC_004688.1 + 102104 0.69 0.567731
Target:  5'- gGGCCAgCGGgGugCCCGCGugGUucaCCAGa -3'
miRNA:   3'- -CUGGU-GCUgUugGGGCGUugCG---GGUC- -5'
20732 3' -57.9 NC_004688.1 + 105596 0.69 0.573838
Target:  5'- cGCCAacCGugAagcGCCCCGCAuuggugucgccguCGCCCAGc -3'
miRNA:   3'- cUGGU--GCugU---UGGGGCGUu------------GCGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.