Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20732 | 3' | -57.9 | NC_004688.1 | + | 75995 | 0.66 | 0.779375 |
Target: 5'- cGGCCAUGACGuUUCCGUca-GCCCAa -3' miRNA: 3'- -CUGGUGCUGUuGGGGCGuugCGGGUc -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 56557 | 0.7 | 0.50778 |
Target: 5'- cGCCGuuggUGAUGugCCCGCGGCGgCCGGg -3' miRNA: 3'- cUGGU----GCUGUugGGGCGUUGCgGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 84518 | 0.7 | 0.517603 |
Target: 5'- -cCCAUGGC-GCCCUggaugGCAGCGCCCGc -3' miRNA: 3'- cuGGUGCUGuUGGGG-----CGUUGCGGGUc -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 14157 | 0.7 | 0.526507 |
Target: 5'- cGGCCGCGAUAggcACCCCcggcaggGCGAUGCaCCAc -3' miRNA: 3'- -CUGGUGCUGU---UGGGG-------CGUUGCG-GGUc -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 99728 | 0.7 | 0.547499 |
Target: 5'- -cCCACGACAcgcugcgaggcgACCUCGguCAgcACGCCCAGg -3' miRNA: 3'- cuGGUGCUGU------------UGGGGC--GU--UGCGGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 90023 | 0.69 | 0.557588 |
Target: 5'- aGGCCGCGcCAguccgcACCCuCGCggUGCCaCAGa -3' miRNA: 3'- -CUGGUGCuGU------UGGG-GCGuuGCGG-GUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 38050 | 0.69 | 0.567731 |
Target: 5'- gGACCAgcaGAUcuucuuGGCCuCCGCGGCGCCCu- -3' miRNA: 3'- -CUGGUg--CUG------UUGG-GGCGUUGCGGGuc -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 102104 | 0.69 | 0.567731 |
Target: 5'- gGGCCAgCGGgGugCCCGCGugGUucaCCAGa -3' miRNA: 3'- -CUGGU-GCUgUugGGGCGUugCG---GGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 105596 | 0.69 | 0.573838 |
Target: 5'- cGCCAacCGugAagcGCCCCGCAuuggugucgccguCGCCCAGc -3' miRNA: 3'- cUGGU--GCugU---UGGGGCGUu------------GCGGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 106914 | 0.72 | 0.441499 |
Target: 5'- cGAUCACGACAAgauCCCCGUGAuCGCCa-- -3' miRNA: 3'- -CUGGUGCUGUU---GGGGCGUU-GCGGguc -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 94509 | 0.72 | 0.43153 |
Target: 5'- uGAUCGcCGACAACCCCGacgucacCGACGUCUGGg -3' miRNA: 3'- -CUGGU-GCUGUUGGGGC-------GUUGCGGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 75843 | 0.72 | 0.43153 |
Target: 5'- cGACUcgGCGACAGgcccaucgcguugUCCCGCAACGCCUc- -3' miRNA: 3'- -CUGG--UGCUGUU-------------GGGGCGUUGCGGGuc -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 56694 | 0.75 | 0.28284 |
Target: 5'- -cUCACGAUGGCCCCGUAaagcucccagauGCGCCCAc -3' miRNA: 3'- cuGGUGCUGUUGGGGCGU------------UGCGGGUc -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 77225 | 0.75 | 0.289589 |
Target: 5'- cACCAgGACcGCCCaCGCcgccAGCGCCCGGg -3' miRNA: 3'- cUGGUgCUGuUGGG-GCG----UUGCGGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 71899 | 0.75 | 0.296463 |
Target: 5'- gGAUaACGACGGCCCCgGCAAC-CCCGGa -3' miRNA: 3'- -CUGgUGCUGUUGGGG-CGUUGcGGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 80834 | 0.74 | 0.310589 |
Target: 5'- uACCGCGACAAUuaCCCGCcACGCCUc- -3' miRNA: 3'- cUGGUGCUGUUG--GGGCGuUGCGGGuc -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 49851 | 0.74 | 0.332729 |
Target: 5'- aGGCCAUGugAccuccggccgagGCCCCGcCGACGgCCAGg -3' miRNA: 3'- -CUGGUGCugU------------UGGGGC-GUUGCgGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 63185 | 0.73 | 0.388779 |
Target: 5'- cGACUACGG--ACCCCgGCGACGgCCGGa -3' miRNA: 3'- -CUGGUGCUguUGGGG-CGUUGCgGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 103488 | 0.73 | 0.388779 |
Target: 5'- uGGCCcccggGCGAUcGCCgUGCAugGCCCAGu -3' miRNA: 3'- -CUGG-----UGCUGuUGGgGCGUugCGGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 84742 | 0.72 | 0.405893 |
Target: 5'- uGCCGCucCAcCgCCCGCGGCGCCCAa -3' miRNA: 3'- cUGGUGcuGUuG-GGGCGUUGCGGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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