miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2074 3' -54.6 NC_001348.1 + 13936 0.66 0.915923
Target:  5'- cGACGA-GGGaGAGGCGgaggagggagaGGCGGAGGa- -3'
miRNA:   3'- cUUGCUaCCC-CUUUGC-----------CCGUCUCCau -5'
2074 3' -54.6 NC_001348.1 + 13983 0.66 0.915923
Target:  5'- cGACGA-GGGaGAGGCGgaggagggagaGGCGGAGGa- -3'
miRNA:   3'- cUUGCUaCCC-CUUUGC-----------CCGUCUCCau -5'
2074 3' -54.6 NC_001348.1 + 14031 0.66 0.915923
Target:  5'- cGACGA-GGGaGAGGCGgaggagggagaGGCGGAGGa- -3'
miRNA:   3'- cUUGCUaCCC-CUUUGC-----------CCGUCUCCau -5'
2074 3' -54.6 NC_001348.1 + 14079 0.66 0.915923
Target:  5'- cGACGA-GGGaGAGGCGgaggagggagaGGCGGAGGa- -3'
miRNA:   3'- cUUGCUaCCC-CUUUGC-----------CCGUCUCCau -5'
2074 3' -54.6 NC_001348.1 + 14157 0.66 0.915923
Target:  5'- cGACGA-GGGaGAGGCGgaggaggacgcGGCGGAGGa- -3'
miRNA:   3'- cUUGCUaCCC-CUUUGC-----------CCGUCUCCau -5'
2074 3' -54.6 NC_001348.1 + 120134 0.66 0.90346
Target:  5'- --cCGAUGGGGAGG-GGGCGc-GGUAc -3'
miRNA:   3'- cuuGCUACCCCUUUgCCCGUcuCCAU- -5'
2074 3' -54.6 NC_001348.1 + 120107 0.66 0.90346
Target:  5'- --cCGAUGGGGAGG-GGGCGc-GGUAc -3'
miRNA:   3'- cuuGCUACCCCUUUgCCCGUcuCCAU- -5'
2074 3' -54.6 NC_001348.1 + 120080 0.66 0.90346
Target:  5'- --cCGAUGGGGAGG-GGGCGc-GGUAc -3'
miRNA:   3'- cuuGCUACCCCUUUgCCCGUcuCCAU- -5'
2074 3' -54.6 NC_001348.1 + 120053 0.66 0.90346
Target:  5'- --cCGAUGGGGAGG-GGGCGc-GGUAc -3'
miRNA:   3'- cuuGCUACCCCUUUgCCCGUcuCCAU- -5'
2074 3' -54.6 NC_001348.1 + 120026 0.66 0.90346
Target:  5'- --cCGAUGGGGAGG-GGGCGc-GGUAc -3'
miRNA:   3'- cuuGCUACCCCUUUgCCCGUcuCCAU- -5'
2074 3' -54.6 NC_001348.1 + 109658 0.66 0.90346
Target:  5'- --cCGAUGGGGAGG-GGGCGc-GGUAc -3'
miRNA:   3'- cuuGCUACCCCUUUgCCCGUcuCCAU- -5'
2074 3' -54.6 NC_001348.1 + 109685 0.66 0.90346
Target:  5'- --cCGAUGGGGAGG-GGGCGc-GGUAc -3'
miRNA:   3'- cuuGCUACCCCUUUgCCCGUcuCCAU- -5'
2074 3' -54.6 NC_001348.1 + 109712 0.66 0.90346
Target:  5'- --cCGAUGGGGAGG-GGGCGc-GGUAc -3'
miRNA:   3'- cuuGCUACCCCUUUgCCCGUcuCCAU- -5'
2074 3' -54.6 NC_001348.1 + 109739 0.66 0.90346
Target:  5'- --cCGAUGGGGAGG-GGGCGc-GGUAc -3'
miRNA:   3'- cuuGCUACCCCUUUgCCCGUcuCCAU- -5'
2074 3' -54.6 NC_001348.1 + 119888 0.66 0.890001
Target:  5'- -----cUGGGGugGAAUGGGguGGGGUGg -3'
miRNA:   3'- cuugcuACCCC--UUUGCCCguCUCCAU- -5'
2074 3' -54.6 NC_001348.1 + 109904 0.66 0.890001
Target:  5'- -----cUGGGGugGAAUGGGguGGGGUGg -3'
miRNA:   3'- cuugcuACCCC--UUUGCCCguCUCCAU- -5'
2074 3' -54.6 NC_001348.1 + 96458 0.67 0.868013
Target:  5'- aAACGAguguuucaaaUGGGGGacGACGGucGCGGAGGa- -3'
miRNA:   3'- cUUGCU----------ACCCCU--UUGCC--CGUCUCCau -5'
2074 3' -54.6 NC_001348.1 + 109766 0.68 0.80914
Target:  5'- --cCGAUGGGGAGGgGGGCGGu---- -3'
miRNA:   3'- cuuGCUACCCCUUUgCCCGUCuccau -5'
2074 3' -54.6 NC_001348.1 + 105871 0.68 0.80914
Target:  5'- gGGGCGAcagGGGGAcGCGGGUcuuGGGGc- -3'
miRNA:   3'- -CUUGCUa--CCCCUuUGCCCGu--CUCCau -5'
2074 3' -54.6 NC_001348.1 + 123920 0.68 0.80914
Target:  5'- gGGGCGAcagGGGGAcGCGGGUcuuGGGGc- -3'
miRNA:   3'- -CUUGCUa--CCCCUuUGCCCGu--CUCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.