Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20741 | 3' | -57 | NC_004688.1 | + | 98663 | 0.71 | 0.50213 |
Target: 5'- -aCgcgCCCCGagaGGucuGGACGGACGCGCCc -3' miRNA: 3'- uaGa--GGGGUag-CC---UCUGCUUGCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 17357 | 0.71 | 0.511927 |
Target: 5'- aAUCUCCgcucgcccuCCA-CGGGGGCGGagacaacgaaguGCGCGCCc -3' miRNA: 3'- -UAGAGG---------GGUaGCCUCUGCU------------UGCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 36013 | 0.71 | 0.511927 |
Target: 5'- ---aCCCCAacUCGGGGGCGAGggUGaCGCCa -3' miRNA: 3'- uagaGGGGU--AGCCUCUGCUU--GC-GCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 11623 | 0.7 | 0.581368 |
Target: 5'- gAUCUCCacucgagCCugaucuUCGGGGGCGAGCGCcucaaacugcgGCCa -3' miRNA: 3'- -UAGAGG-------GGu-----AGCCUCUGCUUGCG-----------CGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 90990 | 0.7 | 0.60295 |
Target: 5'- cGUCUaCCCgAUCGGAGguGCGGAccucgugguCGCGCUc -3' miRNA: 3'- -UAGA-GGGgUAGCCUC--UGCUU---------GCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 44092 | 0.69 | 0.633932 |
Target: 5'- -gUUCCCCGUcCGGguugaGGAUGucguCGCGCCa -3' miRNA: 3'- uaGAGGGGUA-GCC-----UCUGCuu--GCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 33119 | 0.69 | 0.644267 |
Target: 5'- -aCUCCCC---GGGGGCGccCGUGCCg -3' miRNA: 3'- uaGAGGGGuagCCUCUGCuuGCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 58438 | 0.69 | 0.654593 |
Target: 5'- cGUCaaCCUAUgGGGcGGgGAGCGCGCCu -3' miRNA: 3'- -UAGagGGGUAgCCU-CUgCUUGCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 19262 | 0.68 | 0.6721 |
Target: 5'- cUCUCCCCcgccgaugcgguggaCGGAGAUGAACG-GCa -3' miRNA: 3'- uAGAGGGGua-------------GCCUCUGCUUGCgCGg -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 8323 | 0.68 | 0.685424 |
Target: 5'- uUCUgaagCCCCAUCuGGuAGGCGGugaaACGgGCCg -3' miRNA: 3'- uAGA----GGGGUAG-CC-UCUGCU----UGCgCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 63351 | 0.68 | 0.695624 |
Target: 5'- ---aUCCC-UCGGGGAgguagguguuuaCGGGCGCGCCc -3' miRNA: 3'- uagaGGGGuAGCCUCU------------GCUUGCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 60793 | 0.68 | 0.725859 |
Target: 5'- gGUCcaggCCCCGcCGGGGAUGAACaugaagaccgGCGCg -3' miRNA: 3'- -UAGa---GGGGUaGCCUCUGCUUG----------CGCGg -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 93319 | 0.67 | 0.735785 |
Target: 5'- cGUCUUUCCA--GGAGACGuACGCcaugGCCg -3' miRNA: 3'- -UAGAGGGGUagCCUCUGCuUGCG----CGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 28127 | 0.67 | 0.735785 |
Target: 5'- cGUCUcgCCCCAgaUCGGgaGGAUGAGCaggauGCGCUg -3' miRNA: 3'- -UAGA--GGGGU--AGCC--UCUGCUUG-----CGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 31618 | 0.67 | 0.755352 |
Target: 5'- -cCUCCCC--CGuGGugGGGgGCGCCg -3' miRNA: 3'- uaGAGGGGuaGCcUCugCUUgCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 74029 | 0.67 | 0.774475 |
Target: 5'- ---gCCCCAUCGGGGGUGAGgGCuaCg -3' miRNA: 3'- uagaGGGGUAGCCUCUGCUUgCGcgG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 17916 | 0.67 | 0.783847 |
Target: 5'- -gCUCUCCAcgaCGGGGGUGA-CGUGCCa -3' miRNA: 3'- uaGAGGGGUa--GCCUCUGCUuGCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 53779 | 0.66 | 0.79308 |
Target: 5'- uGUCgCCCCAuUUGGguaGGACGAuCGUGUCg -3' miRNA: 3'- -UAGaGGGGU-AGCC---UCUGCUuGCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 7539 | 0.66 | 0.79308 |
Target: 5'- gGUCagCCCCGgauaaGGAGugGAcucgagaaguuuGgGCGCCg -3' miRNA: 3'- -UAGa-GGGGUag---CCUCugCU------------UgCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 99297 | 0.66 | 0.802165 |
Target: 5'- uAUUUCUgCCAgUGGGGGCGcGCaGCGCCa -3' miRNA: 3'- -UAGAGG-GGUaGCCUCUGCuUG-CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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