miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20741 3' -57 NC_004688.1 + 82326 0.66 0.830983
Target:  5'- cGUCUCCuCCGUaucgaggUGGAGGuugugcagcgccaccCGGucgaGCGCGCCg -3'
miRNA:   3'- -UAGAGG-GGUA-------GCCUCU---------------GCU----UGCGCGG- -5'
20741 3' -57 NC_004688.1 + 93319 0.67 0.735785
Target:  5'- cGUCUUUCCA--GGAGACGuACGCcaugGCCg -3'
miRNA:   3'- -UAGAGGGGUagCCUCUGCuUGCG----CGG- -5'
20741 3' -57 NC_004688.1 + 28127 0.67 0.735785
Target:  5'- cGUCUcgCCCCAgaUCGGgaGGAUGAGCaggauGCGCUg -3'
miRNA:   3'- -UAGA--GGGGU--AGCC--UCUGCUUG-----CGCGG- -5'
20741 3' -57 NC_004688.1 + 31618 0.67 0.755352
Target:  5'- -cCUCCCC--CGuGGugGGGgGCGCCg -3'
miRNA:   3'- uaGAGGGGuaGCcUCugCUUgCGCGG- -5'
20741 3' -57 NC_004688.1 + 74029 0.67 0.774475
Target:  5'- ---gCCCCAUCGGGGGUGAGgGCuaCg -3'
miRNA:   3'- uagaGGGGUAGCCUCUGCUUgCGcgG- -5'
20741 3' -57 NC_004688.1 + 17916 0.67 0.783847
Target:  5'- -gCUCUCCAcgaCGGGGGUGA-CGUGCCa -3'
miRNA:   3'- uaGAGGGGUa--GCCUCUGCUuGCGCGG- -5'
20741 3' -57 NC_004688.1 + 53779 0.66 0.79308
Target:  5'- uGUCgCCCCAuUUGGguaGGACGAuCGUGUCg -3'
miRNA:   3'- -UAGaGGGGU-AGCC---UCUGCUuGCGCGG- -5'
20741 3' -57 NC_004688.1 + 7539 0.66 0.79308
Target:  5'- gGUCagCCCCGgauaaGGAGugGAcucgagaaguuuGgGCGCCg -3'
miRNA:   3'- -UAGa-GGGGUag---CCUCugCU------------UgCGCGG- -5'
20741 3' -57 NC_004688.1 + 106706 0.66 0.802165
Target:  5'- uAUCUgCCCGUCGGGca-GAA-GUGCCg -3'
miRNA:   3'- -UAGAgGGGUAGCCUcugCUUgCGCGG- -5'
20741 3' -57 NC_004688.1 + 60793 0.68 0.725859
Target:  5'- gGUCcaggCCCCGcCGGGGAUGAACaugaagaccgGCGCg -3'
miRNA:   3'- -UAGa---GGGGUaGCCUCUGCUUG----------CGCGg -5'
20741 3' -57 NC_004688.1 + 63351 0.68 0.695624
Target:  5'- ---aUCCC-UCGGGGAgguagguguuuaCGGGCGCGCCc -3'
miRNA:   3'- uagaGGGGuAGCCUCU------------GCUUGCGCGG- -5'
20741 3' -57 NC_004688.1 + 8323 0.68 0.685424
Target:  5'- uUCUgaagCCCCAUCuGGuAGGCGGugaaACGgGCCg -3'
miRNA:   3'- uAGA----GGGGUAG-CC-UCUGCU----UGCgCGG- -5'
20741 3' -57 NC_004688.1 + 17357 0.71 0.511927
Target:  5'- aAUCUCCgcucgcccuCCA-CGGGGGCGGagacaacgaaguGCGCGCCc -3'
miRNA:   3'- -UAGAGG---------GGUaGCCUCUGCU------------UGCGCGG- -5'
20741 3' -57 NC_004688.1 + 36013 0.71 0.511927
Target:  5'- ---aCCCCAacUCGGGGGCGAGggUGaCGCCa -3'
miRNA:   3'- uagaGGGGU--AGCCUCUGCUU--GC-GCGG- -5'
20741 3' -57 NC_004688.1 + 11623 0.7 0.581368
Target:  5'- gAUCUCCacucgagCCugaucuUCGGGGGCGAGCGCcucaaacugcgGCCa -3'
miRNA:   3'- -UAGAGG-------GGu-----AGCCUCUGCUUGCG-----------CGG- -5'
20741 3' -57 NC_004688.1 + 90990 0.7 0.60295
Target:  5'- cGUCUaCCCgAUCGGAGguGCGGAccucgugguCGCGCUc -3'
miRNA:   3'- -UAGA-GGGgUAGCCUC--UGCUU---------GCGCGG- -5'
20741 3' -57 NC_004688.1 + 44092 0.69 0.633932
Target:  5'- -gUUCCCCGUcCGGguugaGGAUGucguCGCGCCa -3'
miRNA:   3'- uaGAGGGGUA-GCC-----UCUGCuu--GCGCGG- -5'
20741 3' -57 NC_004688.1 + 33119 0.69 0.644267
Target:  5'- -aCUCCCC---GGGGGCGccCGUGCCg -3'
miRNA:   3'- uaGAGGGGuagCCUCUGCuuGCGCGG- -5'
20741 3' -57 NC_004688.1 + 58438 0.69 0.654593
Target:  5'- cGUCaaCCUAUgGGGcGGgGAGCGCGCCu -3'
miRNA:   3'- -UAGagGGGUAgCCU-CUgCUUGCGCGG- -5'
20741 3' -57 NC_004688.1 + 19262 0.68 0.6721
Target:  5'- cUCUCCCCcgccgaugcgguggaCGGAGAUGAACG-GCa -3'
miRNA:   3'- uAGAGGGGua-------------GCCUCUGCUUGCgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.