miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20748 3' -65 NC_004688.1 + 2134 0.73 0.1485
Target:  5'- cCCGcGCCACACCcGCUugCCGUCGGCa- -3'
miRNA:   3'- uGGC-CGGUGUGGaCGA--GGCGGCCGgu -5'
20748 3' -65 NC_004688.1 + 14750 0.68 0.292308
Target:  5'- cACCGGUCgccauaucccccgcgACACCcaagaagGCUCCGC-GGCCGg -3'
miRNA:   3'- -UGGCCGG---------------UGUGGa------CGAGGCGgCCGGU- -5'
20748 3' -65 NC_004688.1 + 16981 0.66 0.39281
Target:  5'- uCCGGCCGCGgUgcggGCgaugaCGUCGGCCu -3'
miRNA:   3'- uGGCCGGUGUgGa---CGag---GCGGCCGGu -5'
20748 3' -65 NC_004688.1 + 17673 0.67 0.353372
Target:  5'- uCCGGCgCGgGCC-GCUUgGCgGGCCGa -3'
miRNA:   3'- uGGCCG-GUgUGGaCGAGgCGgCCGGU- -5'
20748 3' -65 NC_004688.1 + 19096 0.66 0.409366
Target:  5'- uCCgGGCCACGCgCUGCaugauUUCGaaGGCCGg -3'
miRNA:   3'- uGG-CCGGUGUG-GACG-----AGGCggCCGGU- -5'
20748 3' -65 NC_004688.1 + 20907 0.66 0.39281
Target:  5'- gUCGGCCAucuCGCCgGCgaCCGCaaCGGCCGu -3'
miRNA:   3'- uGGCCGGU---GUGGaCGa-GGCG--GCCGGU- -5'
20748 3' -65 NC_004688.1 + 25964 0.67 0.368806
Target:  5'- gACCGGCCugACgcaucaggCUGCcccaaUCCugGCCGGUCGc -3'
miRNA:   3'- -UGGCCGGugUG--------GACG-----AGG--CGGCCGGU- -5'
20748 3' -65 NC_004688.1 + 31661 0.67 0.3384
Target:  5'- aACUGGCCGCGCaggGCggacaGCuCGGCCGa -3'
miRNA:   3'- -UGGCCGGUGUGga-CGagg--CG-GCCGGU- -5'
20748 3' -65 NC_004688.1 + 33656 0.72 0.172203
Target:  5'- cGCCGGCCGCGCCgucaccaGgaCCGCCcacGCCGc -3'
miRNA:   3'- -UGGCCGGUGUGGa------CgaGGCGGc--CGGU- -5'
20748 3' -65 NC_004688.1 + 35761 0.66 0.42635
Target:  5'- cCCGGCCgagaACGCCUGCagcgucaccCCGCuCGGUa- -3'
miRNA:   3'- uGGCCGG----UGUGGACGa--------GGCG-GCCGgu -5'
20748 3' -65 NC_004688.1 + 36170 0.66 0.42635
Target:  5'- cACCaGGCCgaacgACGCCuUGCUgUgGCUGGCCGc -3'
miRNA:   3'- -UGG-CCGG-----UGUGG-ACGA-GgCGGCCGGU- -5'
20748 3' -65 NC_004688.1 + 37986 0.66 0.390364
Target:  5'- uCCGGCUGCAaagccuccagggCUGCaucguuaUCCGCCGcGCCAg -3'
miRNA:   3'- uGGCCGGUGUg-----------GACG-------AGGCGGC-CGGU- -5'
20748 3' -65 NC_004688.1 + 38511 0.66 0.384696
Target:  5'- -aCGGCCACACCUugUCaaaGCUGGUCc -3'
miRNA:   3'- ugGCCGGUGUGGAcgAGg--CGGCCGGu -5'
20748 3' -65 NC_004688.1 + 38702 0.66 0.42635
Target:  5'- aAUCuuuGCCcCACCcGCUCCGCCGccGCCGc -3'
miRNA:   3'- -UGGc--CGGuGUGGaCGAGGCGGC--CGGU- -5'
20748 3' -65 NC_004688.1 + 39053 0.7 0.240935
Target:  5'- cGCCGcCCGCACCUGCaCCGCUcgGGUUAu -3'
miRNA:   3'- -UGGCcGGUGUGGACGaGGCGG--CCGGU- -5'
20748 3' -65 NC_004688.1 + 39881 0.74 0.115525
Target:  5'- uCCaGUCgGCGCCUGCUCCGCCGGguCCGg -3'
miRNA:   3'- uGGcCGG-UGUGGACGAGGCGGCC--GGU- -5'
20748 3' -65 NC_004688.1 + 42007 0.68 0.331089
Target:  5'- uCCGGCCugGgCgGCggggUCGCCGGuCCGg -3'
miRNA:   3'- uGGCCGGugUgGaCGa---GGCGGCC-GGU- -5'
20748 3' -65 NC_004688.1 + 43738 0.69 0.252441
Target:  5'- uCgGGCC-UGCCUGCguagcCCGCgGGCCAg -3'
miRNA:   3'- uGgCCGGuGUGGACGa----GGCGgCCGGU- -5'
20748 3' -65 NC_004688.1 + 44255 0.7 0.229869
Target:  5'- uCCGGCCGCaagcagucgggGCCgGCgaugCCGCCGGUg- -3'
miRNA:   3'- uGGCCGGUG-----------UGGaCGa---GGCGGCCGgu -5'
20748 3' -65 NC_004688.1 + 45201 0.66 0.401033
Target:  5'- cCCGGCC-CGCaa-CUCUuugauGCCGGCCAc -3'
miRNA:   3'- uGGCCGGuGUGgacGAGG-----CGGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.