Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20748 | 3' | -65 | NC_004688.1 | + | 105916 | 0.66 | 0.42635 |
Target: 5'- -aUGGCCGCAgagaUGCg-CGCCGGCCu -3' miRNA: 3'- ugGCCGGUGUgg--ACGagGCGGCCGGu -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 53620 | 0.68 | 0.316817 |
Target: 5'- cGCCGGCC-UGCUUGUcggcccaCCGCuCGGCCGc -3' miRNA: 3'- -UGGCCGGuGUGGACGa------GGCG-GCCGGU- -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 42007 | 0.68 | 0.331089 |
Target: 5'- uCCGGCCugGgCgGCggggUCGCCGGuCCGg -3' miRNA: 3'- uGGCCGGugUgGaCGa---GGCGGCC-GGU- -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 31661 | 0.67 | 0.3384 |
Target: 5'- aACUGGCCGCGCaggGCggacaGCuCGGCCGa -3' miRNA: 3'- -UGGCCGGUGUGga-CGagg--CG-GCCGGU- -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 69311 | 0.67 | 0.353372 |
Target: 5'- cUCGGCCGCAgC-GCUcacacaggCCGUCGGCCc -3' miRNA: 3'- uGGCCGGUGUgGaCGA--------GGCGGCCGGu -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 17673 | 0.67 | 0.353372 |
Target: 5'- uCCGGCgCGgGCC-GCUUgGCgGGCCGa -3' miRNA: 3'- uGGCCG-GUgUGGaCGAGgCGgCCGGU- -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 58146 | 0.67 | 0.358722 |
Target: 5'- gACCGGucgagaacagccauCCGCACCUGCgg-GCgCGGCCc -3' miRNA: 3'- -UGGCC--------------GGUGUGGACGaggCG-GCCGGu -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 79863 | 0.67 | 0.368806 |
Target: 5'- aACUGaGCgACACCcacggGCgcCCGUCGGCCGa -3' miRNA: 3'- -UGGC-CGgUGUGGa----CGa-GGCGGCCGGU- -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 25964 | 0.67 | 0.368806 |
Target: 5'- gACCGGCCugACgcaucaggCUGCcccaaUCCugGCCGGUCGc -3' miRNA: 3'- -UGGCCGGugUG--------GACG-----AGG--CGGCCGGU- -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 14750 | 0.68 | 0.292308 |
Target: 5'- cACCGGUCgccauaucccccgcgACACCcaagaagGCUCCGC-GGCCGg -3' miRNA: 3'- -UGGCCGG---------------UGUGGa------CGAGGCGgCCGGU- -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 92976 | 0.68 | 0.289678 |
Target: 5'- uCCGGCgCACACCagcgGCUCUa-CGGCCGc -3' miRNA: 3'- uGGCCG-GUGUGGa---CGAGGcgGCCGGU- -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 70233 | 0.69 | 0.283185 |
Target: 5'- aACCuGGCauguCGCCagcGCUCCGCCGGgCGu -3' miRNA: 3'- -UGG-CCGgu--GUGGa--CGAGGCGGCCgGU- -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 58831 | 0.73 | 0.134389 |
Target: 5'- gGCCGGaCACAUCUGCcucgUCGCCGGCg- -3' miRNA: 3'- -UGGCCgGUGUGGACGa---GGCGGCCGgu -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 2134 | 0.73 | 0.1485 |
Target: 5'- cCCGcGCCACACCcGCUugCCGUCGGCa- -3' miRNA: 3'- uGGC-CGGUGUGGaCGA--GGCGGCCGgu -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 65593 | 0.72 | 0.172203 |
Target: 5'- gGCgGGCCGuacccCGCCUGCcgcaUCC-CCGGCCAg -3' miRNA: 3'- -UGgCCGGU-----GUGGACG----AGGcGGCCGGU- -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 33656 | 0.72 | 0.172203 |
Target: 5'- cGCCGGCCGCGCCgucaccaGgaCCGCCcacGCCGc -3' miRNA: 3'- -UGGCCGGUGUGGa------CgaGGCGGc--CGGU- -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 44255 | 0.7 | 0.229869 |
Target: 5'- uCCGGCCGCaagcagucgggGCCgGCgaugCCGCCGGUg- -3' miRNA: 3'- uGGCCGGUG-----------UGGaCGa---GGCGGCCGgu -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 39053 | 0.7 | 0.240935 |
Target: 5'- cGCCGcCCGCACCUGCaCCGCUcgGGUUAu -3' miRNA: 3'- -UGGCcGGUGUGGACGaGGCGG--CCGGU- -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 43738 | 0.69 | 0.252441 |
Target: 5'- uCgGGCC-UGCCUGCguagcCCGCgGGCCAg -3' miRNA: 3'- uGgCCGGuGUGGACGa----GGCGgCCGGU- -5' |
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20748 | 3' | -65 | NC_004688.1 | + | 97403 | 0.69 | 0.268072 |
Target: 5'- -gCGGCC-CACCUGCUgaaucaaguacgaCGCCGGCa- -3' miRNA: 3'- ugGCCGGuGUGGACGAg------------GCGGCCGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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