miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20750 5' -52.3 NC_004688.1 + 9229 0.66 0.969102
Target:  5'- cGGGCucuUcacgagccucuccGGCCUUgccGUCGGCGAcGUGGa -3'
miRNA:   3'- -CCCGu--A-------------CCGGAA---CAGCUGCUuCAUCg -5'
20750 5' -52.3 NC_004688.1 + 12850 0.66 0.966208
Target:  5'- uGGGU--GGCCUUGUCGGUGccGU-GCc -3'
miRNA:   3'- -CCCGuaCCGGAACAGCUGCuuCAuCG- -5'
20750 5' -52.3 NC_004688.1 + 96210 0.66 0.966208
Target:  5'- uGGCGcauUGGCUgUGaaucaucccuUCGGCGggGUAGa -3'
miRNA:   3'- cCCGU---ACCGGaAC----------AGCUGCuuCAUCg -5'
20750 5' -52.3 NC_004688.1 + 33606 0.66 0.962772
Target:  5'- aGGGUgaugAUGGCgUUGUCGcCGAAau-GCu -3'
miRNA:   3'- -CCCG----UACCGgAACAGCuGCUUcauCG- -5'
20750 5' -52.3 NC_004688.1 + 12331 0.66 0.959102
Target:  5'- uGGCGacGCCgagGUUGGCGAAGgcGUu -3'
miRNA:   3'- cCCGUacCGGaa-CAGCUGCUUCauCG- -5'
20750 5' -52.3 NC_004688.1 + 79950 0.66 0.955189
Target:  5'- aGGGcCAUGGgCUUGUCgGACGGGccacGCc -3'
miRNA:   3'- -CCC-GUACCgGAACAG-CUGCUUcau-CG- -5'
20750 5' -52.3 NC_004688.1 + 51408 0.66 0.955189
Target:  5'- aGGC-UGcGCUg-GUCGAcuaCGAAGUGGCg -3'
miRNA:   3'- cCCGuAC-CGGaaCAGCU---GCUUCAUCG- -5'
20750 5' -52.3 NC_004688.1 + 28348 0.67 0.951031
Target:  5'- uGGGUgacgGUGGCgUUGUCGcCGAAcgaccAGCg -3'
miRNA:   3'- -CCCG----UACCGgAACAGCuGCUUca---UCG- -5'
20750 5' -52.3 NC_004688.1 + 43954 0.67 0.951031
Target:  5'- gGGGCGcaucGGCaugacggCGGCGggGUAGUu -3'
miRNA:   3'- -CCCGUa---CCGgaaca--GCUGCuuCAUCG- -5'
20750 5' -52.3 NC_004688.1 + 67606 0.67 0.941959
Target:  5'- cGGGCAggaGGUC--GUCGGCGGcGGUcGGCg -3'
miRNA:   3'- -CCCGUa--CCGGaaCAGCUGCU-UCA-UCG- -5'
20750 5' -52.3 NC_004688.1 + 88224 0.67 0.93704
Target:  5'- cGGCcgGGCUgacggUGagGGCGAAGgcugAGUa -3'
miRNA:   3'- cCCGuaCCGGa----ACagCUGCUUCa---UCG- -5'
20750 5' -52.3 NC_004688.1 + 92856 0.67 0.93704
Target:  5'- gGGGUugucGUGGUCUUGcUCGugGAugcccuugAGCa -3'
miRNA:   3'- -CCCG----UACCGGAAC-AGCugCUuca-----UCG- -5'
20750 5' -52.3 NC_004688.1 + 31475 0.67 0.93704
Target:  5'- cGGGCGaGGCCgggGUgGACcAGG-AGCu -3'
miRNA:   3'- -CCCGUaCCGGaa-CAgCUGcUUCaUCG- -5'
20750 5' -52.3 NC_004688.1 + 47603 0.67 0.933965
Target:  5'- aGGGCGUgcccgucaccaccucGGCCUgGaaucgguaccUCGACGAucugaucgauaGGUGGCa -3'
miRNA:   3'- -CCCGUA---------------CCGGAaC----------AGCUGCU-----------UCAUCG- -5'
20750 5' -52.3 NC_004688.1 + 42000 0.68 0.914774
Target:  5'- uGGGCGgcggGGUCgccgGUCcgGACGuaguGGUAGCc -3'
miRNA:   3'- -CCCGUa---CCGGaa--CAG--CUGCu---UCAUCG- -5'
20750 5' -52.3 NC_004688.1 + 40309 0.68 0.906646
Target:  5'- cGGGCAUGGaaaagccccgcgcaCCUUGguggUGGCGggGUuuucugggGGUg -3'
miRNA:   3'- -CCCGUACC--------------GGAACa---GCUGCuuCA--------UCG- -5'
20750 5' -52.3 NC_004688.1 + 61938 0.68 0.902091
Target:  5'- cGGGUcguccAUGGCCUUGcCG-CGGAGgagacGCu -3'
miRNA:   3'- -CCCG-----UACCGGAACaGCuGCUUCau---CG- -5'
20750 5' -52.3 NC_004688.1 + 75519 0.69 0.881178
Target:  5'- aGGGCgAUGGCCgaguucagGUCGcuCGggGUccaggAGCc -3'
miRNA:   3'- -CCCG-UACCGGaa------CAGCu-GCuuCA-----UCG- -5'
20750 5' -52.3 NC_004688.1 + 35899 0.69 0.87372
Target:  5'- -----cGGCCg---CGACGAGGUGGCg -3'
miRNA:   3'- cccguaCCGGaacaGCUGCUUCAUCG- -5'
20750 5' -52.3 NC_004688.1 + 46524 0.69 0.87372
Target:  5'- cGGCGUGGCgUgcgucccgGUCGACGGua-AGCc -3'
miRNA:   3'- cCCGUACCGgAa-------CAGCUGCUucaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.