miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20753 5' -51.8 NC_004688.1 + 4096 0.69 0.851338
Target:  5'- -cAGAUcguCCGAgaggugccccacaaCUCCGCGGCGUaGGCg -3'
miRNA:   3'- uaUCUGu--GGCU--------------GAGGCGUCGUAaUCG- -5'
20753 5' -51.8 NC_004688.1 + 5357 0.66 0.958384
Target:  5'- uGUGGGCACCGG-UCCGCGGguccacGCu -3'
miRNA:   3'- -UAUCUGUGGCUgAGGCGUCguaau-CG- -5'
20753 5' -51.8 NC_004688.1 + 9643 0.66 0.954345
Target:  5'- -cAGACucuUCGGCuUCCGCAGCGUc--- -3'
miRNA:   3'- uaUCUGu--GGCUG-AGGCGUCGUAaucg -5'
20753 5' -51.8 NC_004688.1 + 13184 0.66 0.958384
Target:  5'- uGUAGAUGCCGcCgUCCGCgAGCugguugUAGUa -3'
miRNA:   3'- -UAUCUGUGGCuG-AGGCG-UCGua----AUCG- -5'
20753 5' -51.8 NC_004688.1 + 14729 0.69 0.86204
Target:  5'- --cGACACCcaagaaGGCUCCGCGGCc--GGUg -3'
miRNA:   3'- uauCUGUGG------CUGAGGCGUCGuaaUCG- -5'
20753 5' -51.8 NC_004688.1 + 16552 0.68 0.892419
Target:  5'- --cGGCACCaaGCUUCGCAGCG--GGCc -3'
miRNA:   3'- uauCUGUGGc-UGAGGCGUCGUaaUCG- -5'
20753 5' -51.8 NC_004688.1 + 18309 0.66 0.969014
Target:  5'- gGUAGAgGaCCGACUCC--AGCAUgggguucuUGGCg -3'
miRNA:   3'- -UAUCUgU-GGCUGAGGcgUCGUA--------AUCG- -5'
20753 5' -51.8 NC_004688.1 + 26081 0.68 0.899383
Target:  5'- gGUAGAcCACCGccagccgcaccGC-CCGCAGCAccgggGGCa -3'
miRNA:   3'- -UAUCU-GUGGC-----------UGaGGCGUCGUaa---UCG- -5'
20753 5' -51.8 NC_004688.1 + 26768 0.69 0.877724
Target:  5'- --cGGgGCUGGC-CCGCGGCGU-AGCu -3'
miRNA:   3'- uauCUgUGGCUGaGGCGUCGUAaUCG- -5'
20753 5' -51.8 NC_004688.1 + 29151 0.66 0.950048
Target:  5'- -cGGGCACCGuGgUCuCGUGGCAUU-GCa -3'
miRNA:   3'- uaUCUGUGGC-UgAG-GCGUCGUAAuCG- -5'
20753 5' -51.8 NC_004688.1 + 35354 0.72 0.719486
Target:  5'- ----cCACCGGCUCCGgCGGCAccGGCc -3'
miRNA:   3'- uaucuGUGGCUGAGGC-GUCGUaaUCG- -5'
20753 5' -51.8 NC_004688.1 + 39341 0.68 0.912521
Target:  5'- --cGuCACCGcccGCUCCGCcguagcgacgAGCAUUAGUc -3'
miRNA:   3'- uauCuGUGGC---UGAGGCG----------UCGUAAUCG- -5'
20753 5' -51.8 NC_004688.1 + 39836 0.77 0.474745
Target:  5'- uGUAGAUuuuGCCGugUCCGguGCcgUGGUu -3'
miRNA:   3'- -UAUCUG---UGGCugAGGCguCGuaAUCG- -5'
20753 5' -51.8 NC_004688.1 + 39875 0.67 0.94549
Target:  5'- --cGGCGCCuGCUCCGCcgGGUccggUGGCg -3'
miRNA:   3'- uauCUGUGGcUGAGGCG--UCGua--AUCG- -5'
20753 5' -51.8 NC_004688.1 + 41597 0.67 0.924589
Target:  5'- gGUGGaACGCCaguuucgCCGCuGCGUUGGCg -3'
miRNA:   3'- -UAUC-UGUGGcuga---GGCGuCGUAAUCG- -5'
20753 5' -51.8 NC_004688.1 + 44344 0.77 0.429921
Target:  5'- --cGGCACCGACcggggCCGCAGCGUagaggucgccggcguUGGCg -3'
miRNA:   3'- uauCUGUGGCUGa----GGCGUCGUA---------------AUCG- -5'
20753 5' -51.8 NC_004688.1 + 46843 0.67 0.930218
Target:  5'- -gAGGCGCaCGGC-CCGCAGUucucGCa -3'
miRNA:   3'- uaUCUGUG-GCUGaGGCGUCGuaauCG- -5'
20753 5' -51.8 NC_004688.1 + 47343 0.68 0.906084
Target:  5'- cGUGGGCGCCG---CCGCAGCcgaAGCc -3'
miRNA:   3'- -UAUCUGUGGCugaGGCGUCGuaaUCG- -5'
20753 5' -51.8 NC_004688.1 + 48389 0.66 0.962172
Target:  5'- cUGGACAUCGccaacCUCUGgAGCGgcgGGCa -3'
miRNA:   3'- uAUCUGUGGCu----GAGGCgUCGUaa-UCG- -5'
20753 5' -51.8 NC_004688.1 + 53250 0.66 0.954345
Target:  5'- -gAGGCGCagGugUCgcucgccacggCGCGGUAUUGGCg -3'
miRNA:   3'- uaUCUGUGg-CugAG-----------GCGUCGUAAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.