Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 18309 | 0.66 | 0.969014 |
Target: 5'- gGUAGAgGaCCGACUCC--AGCAUgggguucuUGGCg -3' miRNA: 3'- -UAUCUgU-GGCUGAGGcgUCGUA--------AUCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 39341 | 0.68 | 0.912521 |
Target: 5'- --cGuCACCGcccGCUCCGCcguagcgacgAGCAUUAGUc -3' miRNA: 3'- uauCuGUGGC---UGAGGCG----------UCGUAAUCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 59263 | 0.68 | 0.918689 |
Target: 5'- --cGACACCG-UUgUGCGGCAUgAGCc -3' miRNA: 3'- uauCUGUGGCuGAgGCGUCGUAaUCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 41597 | 0.67 | 0.924589 |
Target: 5'- gGUGGaACGCCaguuucgCCGCuGCGUUGGCg -3' miRNA: 3'- -UAUC-UGUGGcuga---GGCGuCGUAAUCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 46843 | 0.67 | 0.930218 |
Target: 5'- -gAGGCGCaCGGC-CCGCAGUucucGCa -3' miRNA: 3'- uaUCUGUG-GCUGaGGCGUCGuaauCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 55816 | 0.67 | 0.930218 |
Target: 5'- gGUGGGCGCCgcGAC-CgGCGGC--UAGCg -3' miRNA: 3'- -UAUCUGUGG--CUGaGgCGUCGuaAUCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 39875 | 0.67 | 0.94549 |
Target: 5'- --cGGCGCCuGCUCCGCcgGGUccggUGGCg -3' miRNA: 3'- uauCUGUGGcUGAGGCG--UCGua--AUCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 29151 | 0.66 | 0.950048 |
Target: 5'- -cGGGCACCGuGgUCuCGUGGCAUU-GCa -3' miRNA: 3'- uaUCUGUGGC-UgAG-GCGUCGUAAuCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 53250 | 0.66 | 0.954345 |
Target: 5'- -gAGGCGCagGugUCgcucgccacggCGCGGUAUUGGCg -3' miRNA: 3'- uaUCUGUGg-CugAG-----------GCGUCGUAAUCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 47343 | 0.68 | 0.906084 |
Target: 5'- cGUGGGCGCCG---CCGCAGCcgaAGCc -3' miRNA: 3'- -UAUCUGUGGCugaGGCGUCGuaaUCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 62957 | 0.68 | 0.906084 |
Target: 5'- -gAGAuCACCGcguGCUCCGCGGUugaGGUa -3' miRNA: 3'- uaUCU-GUGGC---UGAGGCGUCGuaaUCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 26081 | 0.68 | 0.899383 |
Target: 5'- gGUAGAcCACCGccagccgcaccGC-CCGCAGCAccgggGGCa -3' miRNA: 3'- -UAUCU-GUGGC-----------UGaGGCGUCGUaa---UCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 39836 | 0.77 | 0.474745 |
Target: 5'- uGUAGAUuuuGCCGugUCCGguGCcgUGGUu -3' miRNA: 3'- -UAUCUG---UGGCugAGGCguCGuaAUCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 65382 | 0.74 | 0.611598 |
Target: 5'- --cGAUGCCGGCUUCGguGCcgUGGUc -3' miRNA: 3'- uauCUGUGGCUGAGGCguCGuaAUCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 35354 | 0.72 | 0.719486 |
Target: 5'- ----cCACCGGCUCCGgCGGCAccGGCc -3' miRNA: 3'- uaucuGUGGCUGAGGC-GUCGUaaUCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 4096 | 0.69 | 0.851338 |
Target: 5'- -cAGAUcguCCGAgaggugccccacaaCUCCGCGGCGUaGGCg -3' miRNA: 3'- uaUCUGu--GGCU--------------GAGGCGUCGUAaUCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 93226 | 0.69 | 0.853842 |
Target: 5'- cGUGGGCACCGAcCUCgGCgaagGGCuc-GGCg -3' miRNA: 3'- -UAUCUGUGGCU-GAGgCG----UCGuaaUCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 14729 | 0.69 | 0.86204 |
Target: 5'- --cGACACCcaagaaGGCUCCGCGGCc--GGUg -3' miRNA: 3'- uauCUGUGG------CUGAGGCGUCGuaaUCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 26768 | 0.69 | 0.877724 |
Target: 5'- --cGGgGCUGGC-CCGCGGCGU-AGCu -3' miRNA: 3'- uauCUgUGGCUGaGGCGUCGUAaUCG- -5' |
|||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 16552 | 0.68 | 0.892419 |
Target: 5'- --cGGCACCaaGCUUCGCAGCG--GGCc -3' miRNA: 3'- uauCUGUGGc-UGAGGCGUCGUaaUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home