Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20755 | 5' | -53.7 | NC_004688.1 | + | 87676 | 0.83 | 0.18612 |
Target: 5'- uUCCCAgccuggauugggguuGCgCGCCCGAACCACGGUCg -3' miRNA: 3'- gAGGGU---------------UGaGUGGGUUUGGUGCCAGg -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 80135 | 0.75 | 0.482263 |
Target: 5'- aCUCCCGACcgCGCCU--AUCGCuGGUCCa -3' miRNA: 3'- -GAGGGUUGa-GUGGGuuUGGUG-CCAGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 35159 | 0.75 | 0.482263 |
Target: 5'- gUCCCGGau-GCCCGAACCACGuUCCg -3' miRNA: 3'- gAGGGUUgagUGGGUUUGGUGCcAGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 57963 | 0.73 | 0.594194 |
Target: 5'- gCUCCacACUCuCCgCAGACCGCGGcCCg -3' miRNA: 3'- -GAGGguUGAGuGG-GUUUGGUGCCaGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 103072 | 0.71 | 0.709343 |
Target: 5'- uUCCCAACggUGCUCGAcuACCucacCGGUCCg -3' miRNA: 3'- gAGGGUUGa-GUGGGUU--UGGu---GCCAGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 80534 | 0.71 | 0.719586 |
Target: 5'- -aCCCGGCgUC-CUCGAugGCCACGGUCa -3' miRNA: 3'- gaGGGUUG-AGuGGGUU--UGGUGCCAGg -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 4556 | 0.71 | 0.729749 |
Target: 5'- uUCCgGGCUUAgCCAuauCCGCGGcUCCu -3' miRNA: 3'- gAGGgUUGAGUgGGUuu-GGUGCC-AGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 75569 | 0.7 | 0.749798 |
Target: 5'- aCUCCUccGGCUgACCCGAGCCAUccaGGUacgCCu -3' miRNA: 3'- -GAGGG--UUGAgUGGGUUUGGUG---CCA---GG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 64628 | 0.7 | 0.76941 |
Target: 5'- -gCCCGGCUCcaugacauuCCCGAGCCACGa-CCa -3' miRNA: 3'- gaGGGUUGAGu--------GGGUUUGGUGCcaGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 17356 | 0.7 | 0.788503 |
Target: 5'- aUCUCcGCUCGCCCu--CCACGGg-- -3' miRNA: 3'- gAGGGuUGAGUGGGuuuGGUGCCagg -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 18283 | 0.7 | 0.788503 |
Target: 5'- uUCUUGGCgauGCCCcAGCUGCGGUCCa -3' miRNA: 3'- gAGGGUUGag-UGGGuUUGGUGCCAGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 68552 | 0.69 | 0.807001 |
Target: 5'- gCUCCggCAGCUucCGCCCccGCUucGCGGUCCu -3' miRNA: 3'- -GAGG--GUUGA--GUGGGuuUGG--UGCCAGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 73563 | 0.69 | 0.816003 |
Target: 5'- aUCUCGuuCUCuuCCCAGGCCAgggGGUCCg -3' miRNA: 3'- gAGGGUu-GAGu-GGGUUUGGUg--CCAGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 67344 | 0.69 | 0.833468 |
Target: 5'- -cCCCAGCUCAUCCAAucggcgUCGUGGUCg -3' miRNA: 3'- gaGGGUUGAGUGGGUUu-----GGUGCCAGg -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 32545 | 0.69 | 0.833468 |
Target: 5'- aUCgUCAACUgCACCCGGGCCAacaaGGUUUg -3' miRNA: 3'- gAG-GGUUGA-GUGGGUUUGGUg---CCAGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 68856 | 0.69 | 0.841914 |
Target: 5'- -gCUCGAUcCGCCCGAACC--GGUCCu -3' miRNA: 3'- gaGGGUUGaGUGGGUUUGGugCCAGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 78847 | 0.68 | 0.850158 |
Target: 5'- -cCCCAGCUgaGCCCuAACCAguCGG-CCg -3' miRNA: 3'- gaGGGUUGAg-UGGGuUUGGU--GCCaGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 27008 | 0.68 | 0.858193 |
Target: 5'- uUCCCucCgugacCCCGGGCCACGGcgCCa -3' miRNA: 3'- gAGGGuuGagu--GGGUUUGGUGCCa-GG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 22888 | 0.68 | 0.873608 |
Target: 5'- -gCCCAGgUCGCC---GCCGCGGcgCCu -3' miRNA: 3'- gaGGGUUgAGUGGguuUGGUGCCa-GG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 89885 | 0.68 | 0.880975 |
Target: 5'- ---gCGGCUCGCCgccuGGCCGgGGUCCg -3' miRNA: 3'- gaggGUUGAGUGGgu--UUGGUgCCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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