Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20755 | 5' | -53.7 | NC_004688.1 | + | 1205 | 0.67 | 0.901653 |
Target: 5'- gCUCCgGAgUCGCCCAcgggaaGGUCCg -3' miRNA: 3'- -GAGGgUUgAGUGGGUuuggugCCAGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 3300 | 0.66 | 0.925769 |
Target: 5'- uUCUCAAC-CACCCAGGggGCGGUg- -3' miRNA: 3'- gAGGGUUGaGUGGGUUUggUGCCAgg -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 3569 | 0.66 | 0.936314 |
Target: 5'- gUCCCAGUUCAUCa----CugGGUCCa -3' miRNA: 3'- gAGGGUUGAGUGGguuugGugCCAGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 4556 | 0.71 | 0.729749 |
Target: 5'- uUCCgGGCUUAgCCAuauCCGCGGcUCCu -3' miRNA: 3'- gAGGgUUGAGUgGGUuu-GGUGCC-AGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 6340 | 0.66 | 0.941208 |
Target: 5'- uCUCCUcggucuGGCgauaACCCAGGCCGgGGUUg -3' miRNA: 3'- -GAGGG------UUGag--UGGGUUUGGUgCCAGg -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 14737 | 0.66 | 0.941208 |
Target: 5'- aUCCCccGCgaCACCCAAGaaggcuCCGCGG-CCg -3' miRNA: 3'- gAGGGu-UGa-GUGGGUUU------GGUGCCaGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 16463 | 0.66 | 0.945851 |
Target: 5'- uUCCCGAC--ACCCAAGCUACaagcgCCg -3' miRNA: 3'- gAGGGUUGagUGGGUUUGGUGcca--GG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 16993 | 0.67 | 0.920117 |
Target: 5'- -gCCCA---UACCCAGuccgGCCGCGGUgCg -3' miRNA: 3'- gaGGGUugaGUGGGUU----UGGUGCCAgG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 17097 | 0.66 | 0.941208 |
Target: 5'- -gCCCGGCUCugcgaCCAGcAUCGCGG-CCu -3' miRNA: 3'- gaGGGUUGAGug---GGUU-UGGUGCCaGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 17356 | 0.7 | 0.788503 |
Target: 5'- aUCUCcGCUCGCCCu--CCACGGg-- -3' miRNA: 3'- gAGGGuUGAGUGGGuuuGGUGCCagg -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 18283 | 0.7 | 0.788503 |
Target: 5'- uUCUUGGCgauGCCCcAGCUGCGGUCCa -3' miRNA: 3'- gAGGGUUGag-UGGGuUUGGUGCCAGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 18751 | 0.67 | 0.914213 |
Target: 5'- aUCCCGACUacugcugacgcCAUCCAGgagggcGCCACGGa-- -3' miRNA: 3'- gAGGGUUGA-----------GUGGGUU------UGGUGCCagg -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 21072 | 0.66 | 0.933257 |
Target: 5'- aCUUCCAGCUCGCCgAAGaggugacgccgaaaCGCGGaUCg -3' miRNA: 3'- -GAGGGUUGAGUGGgUUUg-------------GUGCC-AGg -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 22888 | 0.68 | 0.873608 |
Target: 5'- -gCCCAGgUCGCC---GCCGCGGcgCCu -3' miRNA: 3'- gaGGGUUgAGUGGguuUGGUGCCa-GG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 25508 | 0.66 | 0.945851 |
Target: 5'- -aCCCAccGC-CACCCAuuCCGgGGauUCCu -3' miRNA: 3'- gaGGGU--UGaGUGGGUuuGGUgCC--AGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 25697 | 0.66 | 0.941208 |
Target: 5'- gUCCCGAUUCGCCgAuggcguacGCCACGaucgCCu -3' miRNA: 3'- gAGGGUUGAGUGGgUu-------UGGUGCca--GG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 27008 | 0.68 | 0.858193 |
Target: 5'- uUCCCucCgugacCCCGGGCCACGGcgCCa -3' miRNA: 3'- gAGGGuuGagu--GGGUUUGGUGCCa-GG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 27230 | 0.66 | 0.941208 |
Target: 5'- -aCCCAggugaGCUUGCCCGGAuucuCCG-GGUCCc -3' miRNA: 3'- gaGGGU-----UGAGUGGGUUU----GGUgCCAGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 27898 | 0.67 | 0.920117 |
Target: 5'- uUCCgGGCgaACCCGucGCCGUGGUCCu -3' miRNA: 3'- gAGGgUUGagUGGGUu-UGGUGCCAGG- -5' |
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20755 | 5' | -53.7 | NC_004688.1 | + | 32364 | 0.67 | 0.914213 |
Target: 5'- aCUCCCccgacAGCUCcuuaCCGGGCCACGccaaguucgcGUCCu -3' miRNA: 3'- -GAGGG-----UUGAGug--GGUUUGGUGC----------CAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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