miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20756 5' -56.8 NC_004688.1 + 62746 0.8 0.179405
Target:  5'- gCCGGCUCGacuccCCGCGACUgGUGCGCa -3'
miRNA:   3'- gGGUCGAGCguu--GGCGCUGG-CAUGCG- -5'
20756 5' -56.8 NC_004688.1 + 35736 0.79 0.198287
Target:  5'- aCCCcGCUCGguACCGUcaccgacuGGCUGUGCGCa -3'
miRNA:   3'- -GGGuCGAGCguUGGCG--------CUGGCAUGCG- -5'
20756 5' -56.8 NC_004688.1 + 61854 0.77 0.259292
Target:  5'- uUCCAGCUUGCAAUC-CGACCGgugGCuGCg -3'
miRNA:   3'- -GGGUCGAGCGUUGGcGCUGGCa--UG-CG- -5'
20756 5' -56.8 NC_004688.1 + 33453 0.77 0.285011
Target:  5'- aCCCAGUUCGgAACCGgGAacaCCGUGgcCGCg -3'
miRNA:   3'- -GGGUCGAGCgUUGGCgCU---GGCAU--GCG- -5'
20756 5' -56.8 NC_004688.1 + 16195 0.76 0.334778
Target:  5'- gUCgAGCUgGCGGCgG-GGCCGUGCGCa -3'
miRNA:   3'- -GGgUCGAgCGUUGgCgCUGGCAUGCG- -5'
20756 5' -56.8 NC_004688.1 + 93500 0.75 0.342386
Target:  5'- gUCCGuaUCGCAugucccGCCGCGGCCGgGCGUg -3'
miRNA:   3'- -GGGUcgAGCGU------UGGCGCUGGCaUGCG- -5'
20756 5' -56.8 NC_004688.1 + 79539 0.75 0.357973
Target:  5'- uCCCAGCUgGCGcucgGCCGCcGCCuuuUGCGCg -3'
miRNA:   3'- -GGGUCGAgCGU----UGGCGcUGGc--AUGCG- -5'
20756 5' -56.8 NC_004688.1 + 43340 0.73 0.434042
Target:  5'- cCCCuGCUggCGCAAUCGCGcUCGUcGCGCa -3'
miRNA:   3'- -GGGuCGA--GCGUUGGCGCuGGCA-UGCG- -5'
20756 5' -56.8 NC_004688.1 + 65683 0.73 0.452182
Target:  5'- gCCUAGCUUGCGGCCuCGGCg--ACGCg -3'
miRNA:   3'- -GGGUCGAGCGUUGGcGCUGgcaUGCG- -5'
20756 5' -56.8 NC_004688.1 + 1954 0.73 0.470729
Target:  5'- cCCCGGC-CagAGCCGCGGCCGUAgGg -3'
miRNA:   3'- -GGGUCGaGcgUUGGCGCUGGCAUgCg -5'
20756 5' -56.8 NC_004688.1 + 77874 0.72 0.499251
Target:  5'- aCCAGCagggGUAAUCGCGGCCGgacCGCu -3'
miRNA:   3'- gGGUCGag--CGUUGGCGCUGGCau-GCG- -5'
20756 5' -56.8 NC_004688.1 + 48499 0.72 0.499251
Target:  5'- aCCCGGCgcugaagGCGACCGUGACCaaACGg -3'
miRNA:   3'- -GGGUCGag-----CGUUGGCGCUGGcaUGCg -5'
20756 5' -56.8 NC_004688.1 + 22888 0.72 0.508929
Target:  5'- gCCCAGgUCGCcGCCGCGgcgccuaccccuACCGc-CGCg -3'
miRNA:   3'- -GGGUCgAGCGuUGGCGC------------UGGCauGCG- -5'
20756 5' -56.8 NC_004688.1 + 99984 0.72 0.508929
Target:  5'- cCCCGGC-CGgAACgGCaGACUGUGCGg -3'
miRNA:   3'- -GGGUCGaGCgUUGgCG-CUGGCAUGCg -5'
20756 5' -56.8 NC_004688.1 + 38891 0.72 0.518685
Target:  5'- aCCGGacagCGCGAUCGCG-CCGcGCGCc -3'
miRNA:   3'- gGGUCga--GCGUUGGCGCuGGCaUGCG- -5'
20756 5' -56.8 NC_004688.1 + 60396 0.72 0.528515
Target:  5'- gUCCAGCcCGCGaaGCagGCGGCUGUACcGCa -3'
miRNA:   3'- -GGGUCGaGCGU--UGg-CGCUGGCAUG-CG- -5'
20756 5' -56.8 NC_004688.1 + 17097 0.72 0.538412
Target:  5'- gCCCGGCUCuGCGACCagcaucGCGGCC-UGCa- -3'
miRNA:   3'- -GGGUCGAG-CGUUGG------CGCUGGcAUGcg -5'
20756 5' -56.8 NC_004688.1 + 20903 0.72 0.538412
Target:  5'- gCCAuCUCGCcggcGACCGCaacGGCCGUGgGCg -3'
miRNA:   3'- gGGUcGAGCG----UUGGCG---CUGGCAUgCG- -5'
20756 5' -56.8 NC_004688.1 + 36217 0.71 0.548373
Target:  5'- aCCGGCUCGaacGCCGCcgGACC--ACGCa -3'
miRNA:   3'- gGGUCGAGCgu-UGGCG--CUGGcaUGCG- -5'
20756 5' -56.8 NC_004688.1 + 91349 0.7 0.619338
Target:  5'- gCCCGcgaucuGCUUGCuGCCGCGGCgCcagGCGCa -3'
miRNA:   3'- -GGGU------CGAGCGuUGGCGCUG-Gca-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.