miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20756 5' -56.8 NC_004688.1 + 1954 0.73 0.470729
Target:  5'- cCCCGGC-CagAGCCGCGGCCGUAgGg -3'
miRNA:   3'- -GGGUCGaGcgUUGGCGCUGGCAUgCg -5'
20756 5' -56.8 NC_004688.1 + 5402 0.69 0.690733
Target:  5'- cCCCGGcCUCGCGAagcCCcUGGauaaauCCGUACGCg -3'
miRNA:   3'- -GGGUC-GAGCGUU---GGcGCU------GGCAUGCG- -5'
20756 5' -56.8 NC_004688.1 + 5963 0.66 0.829096
Target:  5'- gCCCGucgaggaucucgauGCUCu---CCGCG-CCGUGCGCc -3'
miRNA:   3'- -GGGU--------------CGAGcguuGGCGCuGGCAUGCG- -5'
20756 5' -56.8 NC_004688.1 + 6611 0.66 0.858123
Target:  5'- uCCguGCcggCGUAACCgaccuccacguggauGCGGCCGUcggugcaGCGCu -3'
miRNA:   3'- -GGguCGa--GCGUUGG---------------CGCUGGCA-------UGCG- -5'
20756 5' -56.8 NC_004688.1 + 6703 0.66 0.823171
Target:  5'- cCUCAGCcgCGCcGCCGCGGCCc----- -3'
miRNA:   3'- -GGGUCGa-GCGuUGGCGCUGGcaugcg -5'
20756 5' -56.8 NC_004688.1 + 8683 0.69 0.700806
Target:  5'- aUCCAGCuguUCGaucCAGCCGUaACCGUuCGCg -3'
miRNA:   3'- -GGGUCG---AGC---GUUGGCGcUGGCAuGCG- -5'
20756 5' -56.8 NC_004688.1 + 10650 0.66 0.84793
Target:  5'- gUCAGCgcggCGUuguCCGCGGCCuGgauCGCg -3'
miRNA:   3'- gGGUCGa---GCGuu-GGCGCUGG-Cau-GCG- -5'
20756 5' -56.8 NC_004688.1 + 14829 0.66 0.855801
Target:  5'- gCCCGGCggcauuaaaccUCGCGACUG-GGCC-UGcCGCa -3'
miRNA:   3'- -GGGUCG-----------AGCGUUGGCgCUGGcAU-GCG- -5'
20756 5' -56.8 NC_004688.1 + 16195 0.76 0.334778
Target:  5'- gUCgAGCUgGCGGCgG-GGCCGUGCGCa -3'
miRNA:   3'- -GGgUCGAgCGUUGgCgCUGGCAUGCG- -5'
20756 5' -56.8 NC_004688.1 + 17097 0.72 0.538412
Target:  5'- gCCCGGCUCuGCGACCagcaucGCGGCC-UGCa- -3'
miRNA:   3'- -GGGUCGAG-CGUUGG------CGCUGGcAUGcg -5'
20756 5' -56.8 NC_004688.1 + 17624 0.68 0.753973
Target:  5'- gCUCGGCggcaacaucgucggCGCGAUcggCGCGGCCG-GCGCu -3'
miRNA:   3'- -GGGUCGa-------------GCGUUG---GCGCUGGCaUGCG- -5'
20756 5' -56.8 NC_004688.1 + 17963 0.67 0.805784
Target:  5'- gUCGGCaggacgaugaagUCGUGGCCGCuGCCGUGCa- -3'
miRNA:   3'- gGGUCG------------AGCGUUGGCGcUGGCAUGcg -5'
20756 5' -56.8 NC_004688.1 + 18271 0.66 0.855801
Target:  5'- cCCCAGCU-GCGguccacgagGCC-CGACCa-GCGCa -3'
miRNA:   3'- -GGGUCGAgCGU---------UGGcGCUGGcaUGCG- -5'
20756 5' -56.8 NC_004688.1 + 20903 0.72 0.538412
Target:  5'- gCCAuCUCGCcggcGACCGCaacGGCCGUGgGCg -3'
miRNA:   3'- gGGUcGAGCG----UUGGCG---CUGGCAUgCG- -5'
20756 5' -56.8 NC_004688.1 + 20990 0.66 0.84793
Target:  5'- gUCCAGgUCGC-GCCGUcAUCGUugGa -3'
miRNA:   3'- -GGGUCgAGCGuUGGCGcUGGCAugCg -5'
20756 5' -56.8 NC_004688.1 + 21070 0.69 0.677566
Target:  5'- uUCCAGCUCGCcgaagagguGACgccgaaacgcggauCGUGACCGUG-GCa -3'
miRNA:   3'- -GGGUCGAGCG---------UUG--------------GCGCUGGCAUgCG- -5'
20756 5' -56.8 NC_004688.1 + 22888 0.72 0.508929
Target:  5'- gCCCAGgUCGCcGCCGCGgcgccuaccccuACCGc-CGCg -3'
miRNA:   3'- -GGGUCgAGCGuUGGCGC------------UGGCauGCG- -5'
20756 5' -56.8 NC_004688.1 + 24238 0.66 0.839864
Target:  5'- uUCgGGUUCcaGCGACgGCGuCCGUcGCGCc -3'
miRNA:   3'- -GGgUCGAG--CGUUGgCGCuGGCA-UGCG- -5'
20756 5' -56.8 NC_004688.1 + 25171 0.66 0.855801
Target:  5'- gUCCAGCgcgcCGUuuCCGUGcucGCCGUacuggucggGCGCg -3'
miRNA:   3'- -GGGUCGa---GCGuuGGCGC---UGGCA---------UGCG- -5'
20756 5' -56.8 NC_004688.1 + 28034 0.66 0.831608
Target:  5'- gCCA-UUCGCAGCCGgaugccguccUGACCGUccuCGCu -3'
miRNA:   3'- gGGUcGAGCGUUGGC----------GCUGGCAu--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.