miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2076 5' -52.1 NC_001348.1 + 107097 0.66 0.983313
Target:  5'- aGAuccGCGcCGCCGGACuGGaGCccgUUGCCu -3'
miRNA:   3'- aCU---UGCuGCGGCUUG-CCaUGa--AGCGG- -5'
2076 5' -52.1 NC_001348.1 + 122695 0.66 0.983313
Target:  5'- aGAuccGCGcCGCCGGACuGGaGCccgUUGCCu -3'
miRNA:   3'- aCU---UGCuGCGGCUUG-CCaUGa--AGCGG- -5'
2076 5' -52.1 NC_001348.1 + 60978 0.66 0.974057
Target:  5'- aUGAACGcauuggcCGCCGAACGGgguauugACUU-GCa -3'
miRNA:   3'- -ACUUGCu------GCGGCUUGCCa------UGAAgCGg -5'
2076 5' -52.1 NC_001348.1 + 124170 0.66 0.973786
Target:  5'- aGGGCGugGCggcaaaacacccuCGcccagGugGGUACgUCGCCg -3'
miRNA:   3'- aCUUGCugCG-------------GC-----UugCCAUGaAGCGG- -5'
2076 5' -52.1 NC_001348.1 + 105622 0.66 0.973786
Target:  5'- aGGGCGugGCggcaaaacacccuCGcccagGugGGUACgUCGCCg -3'
miRNA:   3'- aCUUGCugCG-------------GC-----UugCCAUGaAGCGG- -5'
2076 5' -52.1 NC_001348.1 + 109427 0.67 0.971252
Target:  5'- gGAAauaGACaCCGGGC-GUACaUCGCCa -3'
miRNA:   3'- aCUUg--CUGcGGCUUGcCAUGaAGCGG- -5'
2076 5' -52.1 NC_001348.1 + 120365 0.67 0.971252
Target:  5'- gGAAauaGACaCCGGGC-GUACaUCGCCa -3'
miRNA:   3'- aCUUg--CUGcGGCUUGcCAUGaAGCGG- -5'
2076 5' -52.1 NC_001348.1 + 118376 0.67 0.964665
Target:  5'- gGGGCGGuauaucaUGCCGGcGCGGgGCUUCGUg -3'
miRNA:   3'- aCUUGCU-------GCGGCU-UGCCaUGAAGCGg -5'
2076 5' -52.1 NC_001348.1 + 111416 0.67 0.964665
Target:  5'- gGGGCGGuauaucaUGCCGGcGCGGgGCUUCGUg -3'
miRNA:   3'- aCUUGCU-------GCGGCU-UGCCaUGAAGCGg -5'
2076 5' -52.1 NC_001348.1 + 16970 0.67 0.957853
Target:  5'- -uGugGACGCC--AgGGUAUgUCGCCa -3'
miRNA:   3'- acUugCUGCGGcuUgCCAUGaAGCGG- -5'
2076 5' -52.1 NC_001348.1 + 42996 0.68 0.949765
Target:  5'- --uACGAuaCGCCGAACGGccaugUUUGCCg -3'
miRNA:   3'- acuUGCU--GCGGCUUGCCaug--AAGCGG- -5'
2076 5' -52.1 NC_001348.1 + 120069 0.69 0.925247
Target:  5'- gGGGCGcgguacccCGCCGAuggggagggggcGCGGUACccCGCCg -3'
miRNA:   3'- aCUUGCu-------GCGGCU------------UGCCAUGaaGCGG- -5'
2076 5' -52.1 NC_001348.1 + 120123 0.69 0.925247
Target:  5'- gGGGCGcgguacccCGCCGAuggggagggggcGCGGUACccCGCCg -3'
miRNA:   3'- aCUUGCu-------GCGGCU------------UGCCAUGaaGCGG- -5'
2076 5' -52.1 NC_001348.1 + 109669 0.69 0.925247
Target:  5'- gGGGCGcgguacccCGCCGAuggggagggggcGCGGUACccCGCCg -3'
miRNA:   3'- aCUUGCu-------GCGGCU------------UGCCAUGaaGCGG- -5'
2076 5' -52.1 NC_001348.1 + 110958 0.69 0.919593
Target:  5'- cGAuaGCGACGauGAugGGU-CUaCGCCa -3'
miRNA:   3'- aCU--UGCUGCggCUugCCAuGAaGCGG- -5'
2076 5' -52.1 NC_001348.1 + 118834 0.69 0.919593
Target:  5'- cGAuaGCGACGauGAugGGU-CUaCGCCa -3'
miRNA:   3'- aCU--UGCUGCggCUugCCAuGAaGCGG- -5'
2076 5' -52.1 NC_001348.1 + 109750 0.69 0.919593
Target:  5'- gGGGCGcgguacccCGCCGAuggggagggggGCGGUACccCGCCg -3'
miRNA:   3'- aCUUGCu-------GCGGCU-----------UGCCAUGaaGCGG- -5'
2076 5' -52.1 NC_001348.1 + 123196 0.76 0.584207
Target:  5'- ----gGACGCCGAGCGGcgAUUUcCGCCa -3'
miRNA:   3'- acuugCUGCGGCUUGCCa-UGAA-GCGG- -5'
2076 5' -52.1 NC_001348.1 + 106596 0.76 0.584207
Target:  5'- ----gGACGCCGAGCGGcgAUUUcCGCCa -3'
miRNA:   3'- acuugCUGCGGCUUGCCa-UGAA-GCGG- -5'
2076 5' -52.1 NC_001348.1 + 2071 0.8 0.408586
Target:  5'- cUGAguuGCGGCGCUGAAgGGUGCaUCGCa -3'
miRNA:   3'- -ACU---UGCUGCGGCUUgCCAUGaAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.