miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2077 5' -49.8 NC_001348.1 + 51977 0.67 0.990335
Target:  5'- gGugGAGGAuAGcGGGAUGAccgaagccaaGGAUGggGg -3'
miRNA:   3'- gCugCUCCU-UC-UCCUACU----------UCUGCuuU- -5'
2077 5' -49.8 NC_001348.1 + 119887 0.67 0.988941
Target:  5'- uGGgGuGGAAuGGGGUGggGugGggGg -3'
miRNA:   3'- gCUgCuCCUUcUCCUACuuCugCuuU- -5'
2077 5' -49.8 NC_001348.1 + 109905 0.67 0.988941
Target:  5'- uGGgGuGGAAuGGGGUGggGugGggGg -3'
miRNA:   3'- gCUgCuCCUUcUCCUACuuCugCuuU- -5'
2077 5' -49.8 NC_001348.1 + 105469 0.67 0.987395
Target:  5'- gGACGAuugGGAGGuGGGgugUGAAGACGc-- -3'
miRNA:   3'- gCUGCU---CCUUCuCCU---ACUUCUGCuuu -5'
2077 5' -49.8 NC_001348.1 + 124323 0.67 0.987395
Target:  5'- gGACGAuugGGAGGuGGGgugUGAAGACGc-- -3'
miRNA:   3'- gCUGCU---CCUUCuCCU---ACUUCUGCuuu -5'
2077 5' -49.8 NC_001348.1 + 118433 0.67 0.98381
Target:  5'- uGugGGGGAGuGGGGUGuuGugGAu- -3'
miRNA:   3'- gCugCUCCUUcUCCUACuuCugCUuu -5'
2077 5' -49.8 NC_001348.1 + 111359 0.67 0.98381
Target:  5'- uGugGGGGAGuGGGGUGuuGugGAu- -3'
miRNA:   3'- gCugCUCCUUcUCCUACuuCugCUuu -5'
2077 5' -49.8 NC_001348.1 + 111027 0.68 0.977051
Target:  5'- gGACGGGGAAGAcuuuauaguGGAaGAAGAaucaGAGGa -3'
miRNA:   3'- gCUGCUCCUUCU---------CCUaCUUCUg---CUUU- -5'
2077 5' -49.8 NC_001348.1 + 118765 0.68 0.977051
Target:  5'- gGACGGGGAAGAcuuuauaguGGAaGAAGAaucaGAGGa -3'
miRNA:   3'- gCUGCUCCUUCU---------CCUaCUUCUg---CUUU- -5'
2077 5' -49.8 NC_001348.1 + 105280 0.68 0.974393
Target:  5'- gGACGAGGAcgauguguggGGAGGGcgcggGggGAgGAGc -3'
miRNA:   3'- gCUGCUCCU----------UCUCCUa----CuuCUgCUUu -5'
2077 5' -49.8 NC_001348.1 + 124512 0.68 0.974393
Target:  5'- gGACGAGGAcgauguguggGGAGGGcgcggGggGAgGAGc -3'
miRNA:   3'- gCUGCUCCU----------UCUCCUa----CuuCUgCUUu -5'
2077 5' -49.8 NC_001348.1 + 13459 0.7 0.949298
Target:  5'- cCGGC-AGGAucucGGAUGggGACGGAGg -3'
miRNA:   3'- -GCUGcUCCUucu-CCUACuuCUGCUUU- -5'
2077 5' -49.8 NC_001348.1 + 102609 0.7 0.949298
Target:  5'- uGGCGGGGGu---GGUGAAGGCGAGGg -3'
miRNA:   3'- gCUGCUCCUucucCUACUUCUGCUUU- -5'
2077 5' -49.8 NC_001348.1 + 120134 0.72 0.872157
Target:  5'- cCGAUGGGGAGGGGGcgcgguaccccgccgAUGggGAgGggGc -3'
miRNA:   3'- -GCUGCUCCUUCUCC---------------UACuuCUgCuuU- -5'
2077 5' -49.8 NC_001348.1 + 109658 0.72 0.872157
Target:  5'- cCGAUGGGGAGGGGGcgcgguaccccgccgAUGggGAgGggGc -3'
miRNA:   3'- -GCUGCUCCUUCUCC---------------UACuuCUgCuuU- -5'
2077 5' -49.8 NC_001348.1 + 120080 0.72 0.872157
Target:  5'- cCGAUGGGGAGGGGGcgcgguaccccgccgAUGggGAgGggGc -3'
miRNA:   3'- -GCUGCUCCUUCUCC---------------UACuuCUgCuuU- -5'
2077 5' -49.8 NC_001348.1 + 109739 0.73 0.847854
Target:  5'- cCGAUGGGGAGGGGGcgcgguaccccgccgAUGggGAgGggGg -3'
miRNA:   3'- -GCUGCUCCUUCUCC---------------UACuuCUgCuuU- -5'
2077 5' -49.8 NC_001348.1 + 108072 0.78 0.589661
Target:  5'- uCGugG-GGAucgucaucGGAGGAUGAAGACGAu- -3'
miRNA:   3'- -GCugCuCCU--------UCUCCUACUUCUGCUuu -5'
2077 5' -49.8 NC_001348.1 + 121720 0.78 0.589661
Target:  5'- uCGugG-GGAucgucaucGGAGGAUGAAGACGAu- -3'
miRNA:   3'- -GCugCuCCU--------UCUCCUACUUCUGCUuu -5'
2077 5' -49.8 NC_001348.1 + 14109 0.8 0.464979
Target:  5'- gGAgGAGGGAGAGGcgGAGGAgGGAGa -3'
miRNA:   3'- gCUgCUCCUUCUCCuaCUUCUgCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.