miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20796 5' -55.8 NC_004689.1 + 33623 1.12 0.000803
Target:  5'- aACAACACCGAGACCAACGCACCGGCCa -3'
miRNA:   3'- -UGUUGUGGCUCUGGUUGCGUGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 22357 0.85 0.061766
Target:  5'- uACGGCAauCCGAGACCGGCGaacugACCGGCCa -3'
miRNA:   3'- -UGUUGU--GGCUCUGGUUGCg----UGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 30249 0.8 0.138006
Target:  5'- uCAGCGCCGucgcugcGACCAACccuGCACCGGCUg -3'
miRNA:   3'- uGUUGUGGCu------CUGGUUG---CGUGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 62991 0.79 0.170989
Target:  5'- aACGucCACCGAGgACCAagccGCGCACCGGUa -3'
miRNA:   3'- -UGUu-GUGGCUC-UGGU----UGCGUGGCCGg -5'
20796 5' -55.8 NC_004689.1 + 20931 0.77 0.215793
Target:  5'- gGCAcCACCGGGACCGACGCgugcgaaAUCaGCCg -3'
miRNA:   3'- -UGUuGUGGCUCUGGUUGCG-------UGGcCGG- -5'
20796 5' -55.8 NC_004689.1 + 37253 0.77 0.227738
Target:  5'- cCGugACCGuGACCGGCGCAuCCGuGCUg -3'
miRNA:   3'- uGUugUGGCuCUGGUUGCGU-GGC-CGG- -5'
20796 5' -55.8 NC_004689.1 + 13792 0.73 0.370623
Target:  5'- uGCGuGCGCUGAGcgagguuacguGCCuGCGCugCGGCCu -3'
miRNA:   3'- -UGU-UGUGGCUC-----------UGGuUGCGugGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 62028 0.73 0.370623
Target:  5'- cAUAGCACUGgacuAGGCCGACGCACCauuuacguuauaGGCg -3'
miRNA:   3'- -UGUUGUGGC----UCUGGUUGCGUGG------------CCGg -5'
20796 5' -55.8 NC_004689.1 + 10089 0.73 0.379187
Target:  5'- cGCAACGCCGcauAGGCCGucccaccggGCGUGCCgGGUCg -3'
miRNA:   3'- -UGUUGUGGC---UCUGGU---------UGCGUGG-CCGG- -5'
20796 5' -55.8 NC_004689.1 + 1848 0.72 0.396707
Target:  5'- gGC-GCGCUGAu-CCGAUGCugCGGCCu -3'
miRNA:   3'- -UGuUGUGGCUcuGGUUGCGugGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 30881 0.72 0.402961
Target:  5'- uACcGCGCCGaAGAacgauccguuaccaCCAGCGcCACCGGCUc -3'
miRNA:   3'- -UGuUGUGGC-UCU--------------GGUUGC-GUGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 2032 0.72 0.433266
Target:  5'- uGCaAACACCccGGACUggUguaaGCACCGGCCa -3'
miRNA:   3'- -UG-UUGUGGc-UCUGGuuG----CGUGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 37038 0.72 0.442709
Target:  5'- aACAGCGacUUGAG-CCGAuUGCACUGGCCg -3'
miRNA:   3'- -UGUUGU--GGCUCuGGUU-GCGUGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 16753 0.71 0.461935
Target:  5'- cGCGGCACCGAuagauucgGACCAgcACGuCGCC-GCCu -3'
miRNA:   3'- -UGUUGUGGCU--------CUGGU--UGC-GUGGcCGG- -5'
20796 5' -55.8 NC_004689.1 + 16995 0.71 0.481592
Target:  5'- -uGGCACCGAcGACCGGCGUccagagaaGCUGGgCg -3'
miRNA:   3'- ugUUGUGGCU-CUGGUUGCG--------UGGCCgG- -5'
20796 5' -55.8 NC_004689.1 + 13013 0.71 0.481592
Target:  5'- cGCAGCACCGccgcgcuGGCgAAUGC-CCGuGCCg -3'
miRNA:   3'- -UGUUGUGGCu------CUGgUUGCGuGGC-CGG- -5'
20796 5' -55.8 NC_004689.1 + 11480 0.7 0.522058
Target:  5'- gACAACGCCGAcgauuccggucuGGCCuGCGCcACCGagaaccGCCg -3'
miRNA:   3'- -UGUUGUGGCU------------CUGGuUGCG-UGGC------CGG- -5'
20796 5' -55.8 NC_004689.1 + 22939 0.7 0.553249
Target:  5'- --uGCACCGGGACgGGCuGCGacgaacguguUCGGCCa -3'
miRNA:   3'- uguUGUGGCUCUGgUUG-CGU----------GGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 41154 0.69 0.563773
Target:  5'- cACGAcCACCGcgcaGGAUCAGCGCGCUcGUCa -3'
miRNA:   3'- -UGUU-GUGGC----UCUGGUUGCGUGGcCGG- -5'
20796 5' -55.8 NC_004689.1 + 26659 0.69 0.566941
Target:  5'- uCGACGgugaaggUCGAGACCGGCGUGCCGuugaaugacguguguGCCa -3'
miRNA:   3'- uGUUGU-------GGCUCUGGUUGCGUGGC---------------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.