miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20796 5' -55.8 NC_004689.1 + 1848 0.72 0.396707
Target:  5'- gGC-GCGCUGAu-CCGAUGCugCGGCCu -3'
miRNA:   3'- -UGuUGUGGCUcuGGUUGCGugGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 1942 0.69 0.60632
Target:  5'- ---cCACCG-GACCGcgaGgACCGGCCa -3'
miRNA:   3'- uguuGUGGCuCUGGUug-CgUGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 2032 0.72 0.433266
Target:  5'- uGCaAACACCccGGACUggUguaaGCACCGGCCa -3'
miRNA:   3'- -UG-UUGUGGc-UCUGGuuG----CGUGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 6628 0.68 0.670586
Target:  5'- --cGCACCGAGaACgAGCaggaucaaACCGGCCa -3'
miRNA:   3'- uguUGUGGCUC-UGgUUGcg------UGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 7888 0.68 0.670586
Target:  5'- gACGACGCUuacgcgcaGAGACCAACuGCGCCuuucGCa -3'
miRNA:   3'- -UGUUGUGG--------CUCUGGUUG-CGUGGc---CGg -5'
20796 5' -55.8 NC_004689.1 + 8073 0.67 0.681233
Target:  5'- cCAGCACCGcAGcaguACCGACcccuGCGCCaacagcGGCCa -3'
miRNA:   3'- uGUUGUGGC-UC----UGGUUG----CGUGG------CCGG- -5'
20796 5' -55.8 NC_004689.1 + 8642 0.68 0.627752
Target:  5'- ---cCACCGuG-CCAGCGUugaaACCGGCUg -3'
miRNA:   3'- uguuGUGGCuCuGGUUGCG----UGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 10089 0.73 0.379187
Target:  5'- cGCAACGCCGcauAGGCCGucccaccggGCGUGCCgGGUCg -3'
miRNA:   3'- -UGUUGUGGC---UCUGGU---------UGCGUGG-CCGG- -5'
20796 5' -55.8 NC_004689.1 + 11480 0.7 0.522058
Target:  5'- gACAACGCCGAcgauuccggucuGGCCuGCGCcACCGagaaccGCCg -3'
miRNA:   3'- -UGUUGUGGCU------------CUGGuUGCG-UGGC------CGG- -5'
20796 5' -55.8 NC_004689.1 + 13013 0.71 0.481592
Target:  5'- cGCAGCACCGccgcgcuGGCgAAUGC-CCGuGCCg -3'
miRNA:   3'- -UGUUGUGGCu------CUGgUUGCGuGGC-CGG- -5'
20796 5' -55.8 NC_004689.1 + 13340 0.66 0.743819
Target:  5'- -gAACugCGcGGACUccgGugGCucACCGGCCu -3'
miRNA:   3'- ugUUGugGC-UCUGG---UugCG--UGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 13792 0.73 0.370623
Target:  5'- uGCGuGCGCUGAGcgagguuacguGCCuGCGCugCGGCCu -3'
miRNA:   3'- -UGU-UGUGGCUC-----------UGGuUGCGugGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 15076 0.68 0.669519
Target:  5'- uGCGA-GCCGGGACCAAguuuguuUGCAaCGGCUa -3'
miRNA:   3'- -UGUUgUGGCUCUGGUU-------GCGUgGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 16575 0.68 0.653484
Target:  5'- cAUAcCACCgGAuucgaggucccaguuGACCGAUGCACCacGGCCa -3'
miRNA:   3'- -UGUuGUGG-CU---------------CUGGUUGCGUGG--CCGG- -5'
20796 5' -55.8 NC_004689.1 + 16753 0.71 0.461935
Target:  5'- cGCGGCACCGAuagauucgGACCAgcACGuCGCC-GCCu -3'
miRNA:   3'- -UGUUGUGGCU--------CUGGU--UGC-GUGGcCGG- -5'
20796 5' -55.8 NC_004689.1 + 16834 0.66 0.75293
Target:  5'- cCAGCAgCGGGuaGCCGACGCcacugacGCUGGUg -3'
miRNA:   3'- uGUUGUgGCUC--UGGUUGCG-------UGGCCGg -5'
20796 5' -55.8 NC_004689.1 + 16995 0.71 0.481592
Target:  5'- -uGGCACCGAcGACCGGCGUccagagaaGCUGGgCg -3'
miRNA:   3'- ugUUGUGGCU-CUGGUUGCG--------UGGCCgG- -5'
20796 5' -55.8 NC_004689.1 + 18623 0.67 0.723273
Target:  5'- aACuGCGCCGucagcauggacaGGAUgGACGCGguacccCCGGCCc -3'
miRNA:   3'- -UGuUGUGGC------------UCUGgUUGCGU------GGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 19096 0.68 0.638479
Target:  5'- aGCAACAgguUCGAaaaccacACCAACGCA-CGGCCu -3'
miRNA:   3'- -UGUUGU---GGCUc------UGGUUGCGUgGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 20164 0.66 0.763936
Target:  5'- uACAGCGCCGA--CCAguuuccACGCgacgACCaGGCCc -3'
miRNA:   3'- -UGUUGUGGCUcuGGU------UGCG----UGG-CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.