miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
208 5' -52.6 AC_000007.1 + 6532 0.66 0.733438
Target:  5'- aAGGGCGGCcgccucugcuggaccAACgAGCGCCuacgcggaGAGGUaGCCa -3'
miRNA:   3'- -UCUCGUUG---------------UUG-UCGCGG--------UUCCGaUGG- -5'
208 5' -52.6 AC_000007.1 + 17309 0.68 0.601491
Target:  5'- --cGCGGCAucugcCAcCGCCGAGGCaACCg -3'
miRNA:   3'- ucuCGUUGUu----GUcGCGGUUCCGaUGG- -5'
208 5' -52.6 AC_000007.1 + 5531 0.69 0.543764
Target:  5'- aAGGGCaAGCuGC-GCGCCAAGG--GCCa -3'
miRNA:   3'- -UCUCG-UUGuUGuCGCGGUUCCgaUGG- -5'
208 5' -52.6 AC_000007.1 + 3836 0.71 0.424815
Target:  5'- -cAGCGGCugaAGCGGCgGCgGAGGCUGCa -3'
miRNA:   3'- ucUCGUUG---UUGUCG-CGgUUCCGAUGg -5'
208 5' -52.6 AC_000007.1 + 12759 0.66 0.706234
Target:  5'- uAGuGCAACcAUGGaGCCcAGGUUGCCc -3'
miRNA:   3'- -UCuCGUUGuUGUCgCGGuUCCGAUGG- -5'
208 5' -52.6 AC_000007.1 + 15578 0.66 0.694749
Target:  5'- cGGGCAACAGCucGGCGCCcaccaccggAAaGUUGCUg -3'
miRNA:   3'- uCUCGUUGUUG--UCGCGG---------UUcCGAUGG- -5'
208 5' -52.6 AC_000007.1 + 10827 0.66 0.683195
Target:  5'- uAGcGCAGCAGCcgccGCGCCuggAAGGaaGCCa -3'
miRNA:   3'- -UCuCGUUGUUGu---CGCGG---UUCCgaUGG- -5'
208 5' -52.6 AC_000007.1 + 5450 0.67 0.671587
Target:  5'- cAGGGCGAagacCGGCAGCGCUucaGC-ACCa -3'
miRNA:   3'- -UCUCGUU----GUUGUCGCGGuucCGaUGG- -5'
208 5' -52.6 AC_000007.1 + 15827 0.67 0.659936
Target:  5'- aGGGGCAGguGCGGCGUCu-GGCg--- -3'
miRNA:   3'- -UCUCGUUguUGUCGCGGuuCCGaugg -5'
208 5' -52.6 AC_000007.1 + 17010 0.68 0.613166
Target:  5'- uGGGCAGCAccugcuGCAGUGUCAcGGGCUu-- -3'
miRNA:   3'- uCUCGUUGU------UGUCGCGGU-UCCGAugg -5'
208 5' -52.6 AC_000007.1 + 20803 0.67 0.648257
Target:  5'- uGAGCAugGcuucCAGCGUgGAGGCcguguuguggGCCa -3'
miRNA:   3'- uCUCGUugUu---GUCGCGgUUCCGa---------UGG- -5'
208 5' -52.6 AC_000007.1 + 15262 0.67 0.659936
Target:  5'- gGGGGCGGCAGCuucUGCC---GCUGCCu -3'
miRNA:   3'- -UCUCGUUGUUGuc-GCGGuucCGAUGG- -5'
208 5' -52.6 AC_000007.1 + 16263 0.66 0.733438
Target:  5'- cAGGGCcgccgccgcgcguugGGCGGCAGUGCCGGgucGGCgGCg -3'
miRNA:   3'- -UCUCG---------------UUGUUGUCGCGGUU---CCGaUGg -5'
208 5' -52.6 AC_000007.1 + 26290 0.67 0.64124
Target:  5'- uGGGUGGCGGCGGCGgCAGcugcagcuucuuuuuGGgUGCCa -3'
miRNA:   3'- uCUCGUUGUUGUCGCgGUU---------------CCgAUGG- -5'
208 5' -52.6 AC_000007.1 + 17655 0.66 0.728944
Target:  5'- uGGGGUggUAgcgcgcuguugGCAGCaCCAGGGUccUGCCu -3'
miRNA:   3'- -UCUCGuuGU-----------UGUCGcGGUUCCG--AUGG- -5'
208 5' -52.6 AC_000007.1 + 29960 0.67 0.671587
Target:  5'- -aGGCGAUGACucAGUGaCGAGGCUGCa -3'
miRNA:   3'- ucUCGUUGUUG--UCGCgGUUCCGAUGg -5'
208 5' -52.6 AC_000007.1 + 14066 0.68 0.613166
Target:  5'- uGGGGCGA-AGguGCGCaaacGGGUUGCCa -3'
miRNA:   3'- -UCUCGUUgUUguCGCGgu--UCCGAUGG- -5'
208 5' -52.6 AC_000007.1 + 17563 0.68 0.601491
Target:  5'- -cGGCGACGGCGGCGgCG-GGUU-CCa -3'
miRNA:   3'- ucUCGUUGUUGUCGCgGUuCCGAuGG- -5'
208 5' -52.6 AC_000007.1 + 13043 0.66 0.717637
Target:  5'- uAGcAGCAGCAACAgGCGCgAguuGGGCgucaGCa -3'
miRNA:   3'- -UC-UCGUUGUUGU-CGCGgU---UCCGa---UGg -5'
208 5' -52.6 AC_000007.1 + 33283 0.66 0.690135
Target:  5'- cGGAGCGGCGGCGGCaGCaguuuauucgcGcGCUGCUg -3'
miRNA:   3'- -UCUCGUUGUUGUCG-CGguu--------C-CGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.