miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2080 5' -54.9 NC_001348.1 + 61267 0.66 0.875562
Target:  5'- uGGGCccGCCGGGGUgGAAug-UGGCGUu -3'
miRNA:   3'- uUCCG--CGGCCCUAgUUUcgaAUCGCG- -5'
2080 5' -54.9 NC_001348.1 + 53158 0.66 0.867965
Target:  5'- uGAGGCaGCCcGGG-CAAGGCUUguaggccuugcaAGUGCg -3'
miRNA:   3'- -UUCCG-CGGcCCUaGUUUCGAA------------UCGCG- -5'
2080 5' -54.9 NC_001348.1 + 106197 0.67 0.8267
Target:  5'- -cGGCGCCGGGca-GAGGCcaacCGCg -3'
miRNA:   3'- uuCCGCGGCCCuagUUUCGaaucGCG- -5'
2080 5' -54.9 NC_001348.1 + 123595 0.67 0.8267
Target:  5'- -cGGCGCCGGGca-GAGGCcaacCGCg -3'
miRNA:   3'- uuCCGCGGCCCuagUUUCGaaucGCG- -5'
2080 5' -54.9 NC_001348.1 + 20955 0.67 0.8267
Target:  5'- uGGGGCGacggCGGGAUCG-GGCUuucgggUAGCGg -3'
miRNA:   3'- -UUCCGCg---GCCCUAGUuUCGA------AUCGCg -5'
2080 5' -54.9 NC_001348.1 + 20913 0.68 0.808807
Target:  5'- uGGGCGCgacggCGGGAUC-GGGCUUucgggaAGCGg -3'
miRNA:   3'- uUCCGCG-----GCCCUAGuUUCGAA------UCGCg -5'
2080 5' -54.9 NC_001348.1 + 20703 0.68 0.771029
Target:  5'- uGGGCGCgacggCGGGAUCG-GGCUuucgggUAGCGg -3'
miRNA:   3'- uUCCGCG-----GCCCUAGUuUCGA------AUCGCg -5'
2080 5' -54.9 NC_001348.1 + 20829 0.69 0.741264
Target:  5'- uGGGCGCgacggCGGGAUCGggcuuucgggAAGCggccgaggugGGCGCg -3'
miRNA:   3'- uUCCGCG-----GCCCUAGU----------UUCGaa--------UCGCG- -5'
2080 5' -54.9 NC_001348.1 + 20745 0.69 0.741264
Target:  5'- uGGGCGCgacggCGGGAUCGggcuuucgggAAGCggccgaggugGGCGCg -3'
miRNA:   3'- uUCCGCG-----GCCCUAGU----------UUCGaa--------UCGCG- -5'
2080 5' -54.9 NC_001348.1 + 97682 0.73 0.521773
Target:  5'- cGGGUGCCGGGAUUGAcuGUgaUGGUGCa -3'
miRNA:   3'- uUCCGCGGCCCUAGUUu-CGa-AUCGCG- -5'
2080 5' -54.9 NC_001348.1 + 106619 1.1 0.001991
Target:  5'- cAAGGCGCCGGGAUCAAAGCUUAGCGCa -3'
miRNA:   3'- -UUCCGCGGCCCUAGUUUCGAAUCGCG- -5'
2080 5' -54.9 NC_001348.1 + 123173 1.1 0.001991
Target:  5'- cAAGGCGCCGGGAUCAAAGCUUAGCGCa -3'
miRNA:   3'- -UUCCGCGGCCCUAGUUUCGAAUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.