miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20805 5' -48.9 NC_004689.1 + 18290 0.66 0.982355
Target:  5'- aUCCGGCCAGAgagcgcACGCAccGUACGu -3'
miRNA:   3'- -AGGUCGGUCUgguua-UGCGUa-UAUGU- -5'
20805 5' -48.9 NC_004689.1 + 56765 0.66 0.980034
Target:  5'- uUCCAcGCgAGACCAcuUGCGCAUc---- -3'
miRNA:   3'- -AGGU-CGgUCUGGUu-AUGCGUAuaugu -5'
20805 5' -48.9 NC_004689.1 + 22853 0.67 0.968447
Target:  5'- uUCCuucgacGCCAGAUCGGcACGCG-AUGCGu -3'
miRNA:   3'- -AGGu-----CGGUCUGGUUaUGCGUaUAUGU- -5'
20805 5' -48.9 NC_004689.1 + 63852 0.67 0.964926
Target:  5'- gCCAGCUuGGCCGAUGCGaaaCAUG-ACGu -3'
miRNA:   3'- aGGUCGGuCUGGUUAUGC---GUAUaUGU- -5'
20805 5' -48.9 NC_004689.1 + 54807 0.67 0.952734
Target:  5'- gUCCAGUCGGAaCAGUugGCAc----- -3'
miRNA:   3'- -AGGUCGGUCUgGUUAugCGUauaugu -5'
20805 5' -48.9 NC_004689.1 + 63412 0.68 0.943186
Target:  5'- gCCAGCCAgcGACCGuUGCGCcggAUcgGCu -3'
miRNA:   3'- aGGUCGGU--CUGGUuAUGCG---UAuaUGu -5'
20805 5' -48.9 NC_004689.1 + 49017 0.68 0.937973
Target:  5'- aCCGGCgCuuGCCGAUGCGCGg--ACGg -3'
miRNA:   3'- aGGUCG-GucUGGUUAUGCGUauaUGU- -5'
20805 5' -48.9 NC_004689.1 + 15459 0.69 0.914145
Target:  5'- uUCCGGCCAcGAUCcuUGgGCAUAUgGCAc -3'
miRNA:   3'- -AGGUCGGU-CUGGuuAUgCGUAUA-UGU- -5'
20805 5' -48.9 NC_004689.1 + 11634 0.69 0.893165
Target:  5'- uUCCGGCa--GCCGGUGCGCccuGUGUGCc -3'
miRNA:   3'- -AGGUCGgucUGGUUAUGCG---UAUAUGu -5'
20805 5' -48.9 NC_004689.1 + 20255 0.7 0.885595
Target:  5'- cUCCGGCCAGAcCCAGaacgauguucUGCGCAc----- -3'
miRNA:   3'- -AGGUCGGUCU-GGUU----------AUGCGUauaugu -5'
20805 5' -48.9 NC_004689.1 + 47780 0.7 0.877745
Target:  5'- gCCAGaUCAGACCGcUugGCAUGacgGCGg -3'
miRNA:   3'- aGGUC-GGUCUGGUuAugCGUAUa--UGU- -5'
20805 5' -48.9 NC_004689.1 + 38931 0.71 0.805803
Target:  5'- gCCAGCCGcuCUGAUACGCGUcUGCGu -3'
miRNA:   3'- aGGUCGGUcuGGUUAUGCGUAuAUGU- -5'
20805 5' -48.9 NC_004689.1 + 37523 1.1 0.004734
Target:  5'- uUCCAGCCAGACCAAUACGCAUAUACAc -3'
miRNA:   3'- -AGGUCGGUCUGGUUAUGCGUAUAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.