miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2084 3' -59.7 NC_001348.1 + 124705 0.67 0.618377
Target:  5'- gGGACucCGuCACCCCCGacucugcgGGGGGCuccuccccccgCGCCCu -3'
miRNA:   3'- -UUUGu-GC-GUGGGGGU--------UCCUCG-----------GCGGG- -5'
2084 3' -59.7 NC_001348.1 + 123483 0.69 0.527863
Target:  5'- uGGACGCGgugGCCCUCGAGaGGUgGCCCa -3'
miRNA:   3'- -UUUGUGCg--UGGGGGUUCcUCGgCGGG- -5'
2084 3' -59.7 NC_001348.1 + 123031 0.74 0.278573
Target:  5'- gGAAUACGCcgaaauCCCCCGuuuGGGGCCgGUCCg -3'
miRNA:   3'- -UUUGUGCGu-----GGGGGUu--CCUCGG-CGGG- -5'
2084 3' -59.7 NC_001348.1 + 122898 0.66 0.659169
Target:  5'- ---gGCGUAuUCCCCGGGGGGCCcugcauacCCCg -3'
miRNA:   3'- uuugUGCGU-GGGGGUUCCUCGGc-------GGG- -5'
2084 3' -59.7 NC_001348.1 + 120663 0.66 0.699613
Target:  5'- ---aGCGCucuACaCCCCAAcgcgcGGGGUCGCCUg -3'
miRNA:   3'- uuugUGCG---UG-GGGGUU-----CCUCGGCGGG- -5'
2084 3' -59.7 NC_001348.1 + 117952 0.68 0.587862
Target:  5'- gGGACACGCcggACUUCCGAcuauuGGAuuGUCGCCCg -3'
miRNA:   3'- -UUUGUGCG---UGGGGGUU-----CCU--CGGCGGG- -5'
2084 3' -59.7 NC_001348.1 + 113737 0.66 0.669334
Target:  5'- gAAACACGCugCUCCAA--AGUCuCCCa -3'
miRNA:   3'- -UUUGUGCGugGGGGUUccUCGGcGGG- -5'
2084 3' -59.7 NC_001348.1 + 111839 0.68 0.587862
Target:  5'- gGGACACGCcggACUUCCGAcuauuGGAuuGUCGCCCg -3'
miRNA:   3'- -UUUGUGCG---UGGGGGUU-----CCU--CGGCGGG- -5'
2084 3' -59.7 NC_001348.1 + 109129 0.66 0.699613
Target:  5'- ---aGCGCucuACaCCCCAAcgcgcGGGGUCGCCUg -3'
miRNA:   3'- uuugUGCG---UG-GGGGUU-----CCUCGGCGGG- -5'
2084 3' -59.7 NC_001348.1 + 106894 0.66 0.659169
Target:  5'- ---gGCGUAuUCCCCGGGGGGCCcugcauacCCCg -3'
miRNA:   3'- uuugUGCGU-GGGGGUUCCUCGGc-------GGG- -5'
2084 3' -59.7 NC_001348.1 + 106761 0.67 0.608185
Target:  5'- gGAAUACGCcgaaauCCCCCGuuuGGGCCgGUCCg -3'
miRNA:   3'- -UUUGUGCGu-----GGGGGUuc-CUCGG-CGGG- -5'
2084 3' -59.7 NC_001348.1 + 106309 0.69 0.527863
Target:  5'- uGGACGCGgugGCCCUCGAGaGGUgGCCCa -3'
miRNA:   3'- -UUUGUGCg--UGGGGGUUCcUCGgCGGG- -5'
2084 3' -59.7 NC_001348.1 + 105087 0.67 0.618377
Target:  5'- gGGACucCGuCACCCCCGacucugcgGGGGGCuccuccccccgCGCCCu -3'
miRNA:   3'- -UUUGu-GC-GUGGGGGU--------UCCUCG-----------GCGGG- -5'
2084 3' -59.7 NC_001348.1 + 105049 0.68 0.577745
Target:  5'- ---gGCGgACCCCgggaGAGGAgGCCaGCCCu -3'
miRNA:   3'- uuugUGCgUGGGGg---UUCCU-CGG-CGGG- -5'
2084 3' -59.7 NC_001348.1 + 104897 0.67 0.638784
Target:  5'- aGGGCugGCcuccuCUCCCGGGGuccgccGGgCGCCCa -3'
miRNA:   3'- -UUUGugCGu----GGGGGUUCC------UCgGCGGG- -5'
2084 3' -59.7 NC_001348.1 + 96232 0.66 0.659169
Target:  5'- -uAC-CGgAUCCaCCAGGGuuGCUGCCCa -3'
miRNA:   3'- uuUGuGCgUGGG-GGUUCCu-CGGCGGG- -5'
2084 3' -59.7 NC_001348.1 + 90798 0.67 0.598011
Target:  5'- ---aACGCAg--CCGAGGAcGCCGCCCu -3'
miRNA:   3'- uuugUGCGUgggGGUUCCU-CGGCGGG- -5'
2084 3' -59.7 NC_001348.1 + 82884 0.66 0.679469
Target:  5'- -cACuCGCACCCCCAcggauuagaucgAGGGuCCGUUCu -3'
miRNA:   3'- uuUGuGCGUGGGGGU------------UCCUcGGCGGG- -5'
2084 3' -59.7 NC_001348.1 + 75612 0.68 0.577745
Target:  5'- gAGACGCGuCGCCCCUuAGGGGauGUCUu -3'
miRNA:   3'- -UUUGUGC-GUGGGGGuUCCUCggCGGG- -5'
2084 3' -59.7 NC_001348.1 + 74256 0.79 0.119394
Target:  5'- -----aGCGCCCCCGaugcGGGAGCCGCCa -3'
miRNA:   3'- uuugugCGUGGGGGU----UCCUCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.