Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 123483 | 0.69 | 0.527863 |
Target: 5'- uGGACGCGgugGCCCUCGAGaGGUgGCCCa -3' miRNA: 3'- -UUUGUGCg--UGGGGGUUCcUCGgCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 5455 | 0.69 | 0.527863 |
Target: 5'- gAGACACaaAUgUCCGGGGAGCCGUUCu -3' miRNA: 3'- -UUUGUGcgUGgGGGUUCCUCGGCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 106309 | 0.69 | 0.527863 |
Target: 5'- uGGACGCGgugGCCCUCGAGaGGUgGCCCa -3' miRNA: 3'- -UUUGUGCg--UGGGGGUUCcUCGgCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 123031 | 0.74 | 0.278573 |
Target: 5'- gGAAUACGCcgaaauCCCCCGuuuGGGGCCgGUCCg -3' miRNA: 3'- -UUUGUGCGu-----GGGGGUu--CCUCGG-CGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 51551 | 0.74 | 0.252799 |
Target: 5'- -uGCGCGUcagaaauguaacuGCCgucgCCCGAGGAGCgGCCCa -3' miRNA: 3'- uuUGUGCG-------------UGG----GGGUUCCUCGgCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 74256 | 0.79 | 0.119394 |
Target: 5'- -----aGCGCCCCCGaugcGGGAGCCGCCa -3' miRNA: 3'- uuugugCGUGGGGGU----UCCUCGGCGGg -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 8675 | 1.08 | 0.001018 |
Target: 5'- uAAACACGCACCCCCAAGGAGCCGCCCu -3' miRNA: 3'- -UUUGUGCGUGGGGGUUCCUCGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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