miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2084 3' -59.7 NC_001348.1 + 123483 0.69 0.527863
Target:  5'- uGGACGCGgugGCCCUCGAGaGGUgGCCCa -3'
miRNA:   3'- -UUUGUGCg--UGGGGGUUCcUCGgCGGG- -5'
2084 3' -59.7 NC_001348.1 + 5455 0.69 0.527863
Target:  5'- gAGACACaaAUgUCCGGGGAGCCGUUCu -3'
miRNA:   3'- -UUUGUGcgUGgGGGUUCCUCGGCGGG- -5'
2084 3' -59.7 NC_001348.1 + 106309 0.69 0.527863
Target:  5'- uGGACGCGgugGCCCUCGAGaGGUgGCCCa -3'
miRNA:   3'- -UUUGUGCg--UGGGGGUUCcUCGgCGGG- -5'
2084 3' -59.7 NC_001348.1 + 123031 0.74 0.278573
Target:  5'- gGAAUACGCcgaaauCCCCCGuuuGGGGCCgGUCCg -3'
miRNA:   3'- -UUUGUGCGu-----GGGGGUu--CCUCGG-CGGG- -5'
2084 3' -59.7 NC_001348.1 + 51551 0.74 0.252799
Target:  5'- -uGCGCGUcagaaauguaacuGCCgucgCCCGAGGAGCgGCCCa -3'
miRNA:   3'- uuUGUGCG-------------UGG----GGGUUCCUCGgCGGG- -5'
2084 3' -59.7 NC_001348.1 + 74256 0.79 0.119394
Target:  5'- -----aGCGCCCCCGaugcGGGAGCCGCCa -3'
miRNA:   3'- uuugugCGUGGGGGU----UCCUCGGCGGg -5'
2084 3' -59.7 NC_001348.1 + 8675 1.08 0.001018
Target:  5'- uAAACACGCACCCCCAAGGAGCCGCCCu -3'
miRNA:   3'- -UUUGUGCGUGGGGGUUCCUCGGCGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.