miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2085 5' -52.4 NC_001348.1 + 4830 0.7 0.845405
Target:  5'- gAAUGGcccAAACAUACGACGUaUUCGUCg -3'
miRNA:   3'- gUUACC---UUUGUGUGCUGCGgAGGCGG- -5'
2085 5' -52.4 NC_001348.1 + 5813 0.68 0.922699
Target:  5'- --cUGGAcgcauuuACACugGAgGCCUuuGUCg -3'
miRNA:   3'- guuACCUu------UGUGugCUgCGGAggCGG- -5'
2085 5' -52.4 NC_001348.1 + 23112 0.71 0.810705
Target:  5'- --uUGGAAACACACaGugGaUUCCGUCu -3'
miRNA:   3'- guuACCUUUGUGUG-CugCgGAGGCGG- -5'
2085 5' -52.4 NC_001348.1 + 29497 0.66 0.975714
Target:  5'- ---aGGAcGCAUACGA-GCUgaaaaugCCGCCu -3'
miRNA:   3'- guuaCCUuUGUGUGCUgCGGa------GGCGG- -5'
2085 5' -52.4 NC_001348.1 + 35645 0.66 0.966996
Target:  5'- ---gGGAAAUuuuaACAgGAUuucCCUCCGCCg -3'
miRNA:   3'- guuaCCUUUG----UGUgCUGc--GGAGGCGG- -5'
2085 5' -52.4 NC_001348.1 + 47708 1.13 0.003096
Target:  5'- gCAAUGGAAACACACGACGCCUCCGCCg -3'
miRNA:   3'- -GUUACCUUUGUGUGCUGCGGAGGCGG- -5'
2085 5' -52.4 NC_001348.1 + 53705 0.67 0.947927
Target:  5'- uGAUGGGu-CACGCgGGCGCCUggcacCCGUa -3'
miRNA:   3'- gUUACCUuuGUGUG-CUGCGGA-----GGCGg -5'
2085 5' -52.4 NC_001348.1 + 60621 0.72 0.76353
Target:  5'- uGAUGGAGAaACuCGACGUCUCCGa- -3'
miRNA:   3'- gUUACCUUUgUGuGCUGCGGAGGCgg -5'
2085 5' -52.4 NC_001348.1 + 60646 0.66 0.975714
Target:  5'- aAAUGG-GACACAa-AUGCCUuuGUCg -3'
miRNA:   3'- gUUACCuUUGUGUgcUGCGGAggCGG- -5'
2085 5' -52.4 NC_001348.1 + 64959 0.7 0.864676
Target:  5'- uUAAUGGAgacguuucgccugaaGACGCACaACGCCUCaCGgCu -3'
miRNA:   3'- -GUUACCU---------------UUGUGUGcUGCGGAG-GCgG- -5'
2085 5' -52.4 NC_001348.1 + 75562 0.66 0.966996
Target:  5'- uCGGUGGAGcUuuGCGACGCCacaGCCu -3'
miRNA:   3'- -GUUACCUUuGugUGCUGCGGaggCGG- -5'
2085 5' -52.4 NC_001348.1 + 77786 0.69 0.90452
Target:  5'- gGAUGGAGcCAUGCGGCGCa-CUGCa -3'
miRNA:   3'- gUUACCUUuGUGUGCUGCGgaGGCGg -5'
2085 5' -52.4 NC_001348.1 + 87010 0.77 0.519262
Target:  5'- --cUGGGAACGCuCGugGCCUgugcuacguugggaaCCGCCg -3'
miRNA:   3'- guuACCUUUGUGuGCugCGGA---------------GGCGG- -5'
2085 5' -52.4 NC_001348.1 + 93365 0.66 0.978206
Target:  5'- --cUGGAAgGCAUugGGC-CCUCCGg- -3'
miRNA:   3'- guuACCUU-UGUGugCUGcGGAGGCgg -5'
2085 5' -52.4 NC_001348.1 + 98535 0.66 0.97302
Target:  5'- -cAUGGcAACAUACacacuauuuaGGCGCaguuuaUCCGCCg -3'
miRNA:   3'- guUACCuUUGUGUG----------CUGCGg-----AGGCGG- -5'
2085 5' -52.4 NC_001348.1 + 100041 0.67 0.947927
Target:  5'- ---cGGAGACAauuaacCGACaCCaUCCGCCg -3'
miRNA:   3'- guuaCCUUUGUgu----GCUGcGG-AGGCGG- -5'
2085 5' -52.4 NC_001348.1 + 100454 0.69 0.90452
Target:  5'- --cUGGugcuAACACACG-CGCaUCCGUCg -3'
miRNA:   3'- guuACCu---UUGUGUGCuGCGgAGGCGG- -5'
2085 5' -52.4 NC_001348.1 + 105579 0.66 0.978206
Target:  5'- gGGUGGAAGCACGaGugG-UUCUGCg -3'
miRNA:   3'- gUUACCUUUGUGUgCugCgGAGGCGg -5'
2085 5' -52.4 NC_001348.1 + 106684 0.68 0.928252
Target:  5'- gAGUGGAGGCGCuGCGACGgaggUgCGCCu -3'
miRNA:   3'- gUUACCUUUGUG-UGCUGCgg--AgGCGG- -5'
2085 5' -52.4 NC_001348.1 + 108710 0.66 0.975714
Target:  5'- aCGAUGGGgaaacgGGCAgaggUACGACcCCUCCGUUc -3'
miRNA:   3'- -GUUACCU------UUGU----GUGCUGcGGAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.