Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2085 | 5' | -52.4 | NC_001348.1 | + | 47708 | 1.13 | 0.003096 |
Target: 5'- gCAAUGGAAACACACGACGCCUCCGCCg -3' miRNA: 3'- -GUUACCUUUGUGUGCUGCGGAGGCGG- -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 105579 | 0.66 | 0.978206 |
Target: 5'- gGGUGGAAGCACGaGugG-UUCUGCg -3' miRNA: 3'- gUUACCUUUGUGUgCugCgGAGGCGg -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 121082 | 0.66 | 0.975714 |
Target: 5'- aCGAUGGGgaaacgGGCAgaggUACGACcCCUCCGUUc -3' miRNA: 3'- -GUUACCU------UUGU----GUGCUGcGGAGGCGG- -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 35645 | 0.66 | 0.966996 |
Target: 5'- ---gGGAAAUuuuaACAgGAUuucCCUCCGCCg -3' miRNA: 3'- guuaCCUUUG----UGUgCUGc--GGAGGCGG- -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 116314 | 0.66 | 0.963652 |
Target: 5'- gUAcgGGAGACGCA--GCGC--CCGCCa -3' miRNA: 3'- -GUuaCCUUUGUGUgcUGCGgaGGCGG- -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 111243 | 0.67 | 0.959708 |
Target: 5'- --uUGGAAGCgacgucgACACGAaGCC-CCGCg -3' miRNA: 3'- guuACCUUUG-------UGUGCUgCGGaGGCGg -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 123108 | 0.68 | 0.928252 |
Target: 5'- gAGUGGAGGCGCuGCGACGgaggUgCGCCu -3' miRNA: 3'- gUUACCUUUGUG-UGCUGCgg--AgGCGG- -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 64959 | 0.7 | 0.864676 |
Target: 5'- uUAAUGGAgacguuucgccugaaGACGCACaACGCCUCaCGgCu -3' miRNA: 3'- -GUUACCU---------------UUGUGUGcUGCGGAG-GCgG- -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 4830 | 0.7 | 0.845405 |
Target: 5'- gAAUGGcccAAACAUACGACGUaUUCGUCg -3' miRNA: 3'- gUUACC---UUUGUGUGCUGCGgAGGCGG- -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 60621 | 0.72 | 0.76353 |
Target: 5'- uGAUGGAGAaACuCGACGUCUCCGa- -3' miRNA: 3'- gUUACCUUUgUGuGCUGCGGAGGCgg -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 100041 | 0.67 | 0.947927 |
Target: 5'- ---cGGAGACAauuaacCGACaCCaUCCGCCg -3' miRNA: 3'- guuaCCUUUGUgu----GCUGcGG-AGGCGG- -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 53705 | 0.67 | 0.947927 |
Target: 5'- uGAUGGGu-CACGCgGGCGCCUggcacCCGUa -3' miRNA: 3'- gUUACCUuuGUGUG-CUGCGGA-----GGCGg -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 118549 | 0.67 | 0.959708 |
Target: 5'- --uUGGAAGCgacgucgACACGAaGCC-CCGCg -3' miRNA: 3'- guuACCUUUG-------UGUGCUgCGGaGGCGg -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 75562 | 0.66 | 0.966996 |
Target: 5'- uCGGUGGAGcUuuGCGACGCCacaGCCu -3' miRNA: 3'- -GUUACCUUuGugUGCUGCGGaggCGG- -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 98535 | 0.66 | 0.97302 |
Target: 5'- -cAUGGcAACAUACacacuauuuaGGCGCaguuuaUCCGCCg -3' miRNA: 3'- guUACCuUUGUGUG----------CUGCGg-----AGGCGG- -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 108710 | 0.66 | 0.975714 |
Target: 5'- aCGAUGGGgaaacgGGCAgaggUACGACcCCUCCGUUc -3' miRNA: 3'- -GUUACCU------UUGU----GUGCUGcGGAGGCGG- -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 29497 | 0.66 | 0.975714 |
Target: 5'- ---aGGAcGCAUACGA-GCUgaaaaugCCGCCu -3' miRNA: 3'- guuaCCUuUGUGUGCUgCGGa------GGCGG- -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 60646 | 0.66 | 0.975714 |
Target: 5'- aAAUGG-GACACAa-AUGCCUuuGUCg -3' miRNA: 3'- gUUACCuUUGUGUgcUGCGGAggCGG- -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 124213 | 0.66 | 0.978206 |
Target: 5'- gGGUGGAAGCACGaGugG-UUCUGCg -3' miRNA: 3'- gUUACCUUUGUGUgCugCgGAGGCGg -5' |
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2085 | 5' | -52.4 | NC_001348.1 | + | 87010 | 0.77 | 0.519262 |
Target: 5'- --cUGGGAACGCuCGugGCCUgugcuacguugggaaCCGCCg -3' miRNA: 3'- guuACCUUUGUGuGCugCGGA---------------GGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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