Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2086 | 3' | -49.2 | NC_001348.1 | + | 185 | 0.69 | 0.972423 |
Target: 5'- ---cACUAC--UCCCGCCGaccuggGACCCCg -3' miRNA: 3'- caaaUGAUGcaAGGGUGGU------UUGGGGg -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 16133 | 0.66 | 0.996239 |
Target: 5'- ---gGCUACGcuUUUCCAauCCAAACCCa- -3' miRNA: 3'- caaaUGAUGC--AAGGGU--GGUUUGGGgg -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 18396 | 0.68 | 0.987869 |
Target: 5'- ---gACUAUuUUCUC-CCAAAUCCCCc -3' miRNA: 3'- caaaUGAUGcAAGGGuGGUUUGGGGG- -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 29019 | 0.66 | 0.996239 |
Target: 5'- -aUUugUACcccCCCACacAACCCCCu -3' miRNA: 3'- caAAugAUGcaaGGGUGguUUGGGGG- -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 33533 | 0.69 | 0.969397 |
Target: 5'- -gUUGCUAuuCGUUCCCACCuauuuaaaaAAAUCUCUa -3' miRNA: 3'- caAAUGAU--GCAAGGGUGG---------UUUGGGGG- -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 38060 | 0.67 | 0.993009 |
Target: 5'- ---aACUGCGUguaUAUCAAACCCUCc -3' miRNA: 3'- caaaUGAUGCAaggGUGGUUUGGGGG- -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 39225 | 0.66 | 0.997753 |
Target: 5'- ---aGCgUACGUgUCCCccgauGCCAAcauauCCCCCg -3' miRNA: 3'- caaaUG-AUGCA-AGGG-----UGGUUu----GGGGG- -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 46662 | 0.66 | 0.996239 |
Target: 5'- ---aGCaGCGU--CCGCUGAACCCCUa -3' miRNA: 3'- caaaUGaUGCAagGGUGGUUUGGGGG- -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 50824 | 0.66 | 0.996239 |
Target: 5'- ---gACUGugacaGUgCCCACgGGGCCCCUg -3' miRNA: 3'- caaaUGAUg----CAaGGGUGgUUUGGGGG- -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 59289 | 0.68 | 0.987869 |
Target: 5'- ---cGCUACcagUCCCGCCAAAaccaauaaUCCCa -3' miRNA: 3'- caaaUGAUGca-AGGGUGGUUUg-------GGGG- -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 61272 | 0.7 | 0.962648 |
Target: 5'- ---cGCUA-GUaauaUCUCACCAcAGCCCCCg -3' miRNA: 3'- caaaUGAUgCA----AGGGUGGU-UUGGGGG- -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 62547 | 0.71 | 0.936413 |
Target: 5'- -aUUAUUAcCGcuuuuaaacUUCCCAUCAAACCCCg -3' miRNA: 3'- caAAUGAU-GC---------AAGGGUGGUUUGGGGg -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 65214 | 0.81 | 0.498999 |
Target: 5'- uGUUUAC-GC-UUCCCGCUGAACCCCCc -3' miRNA: 3'- -CAAAUGaUGcAAGGGUGGUUUGGGGG- -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 66450 | 1.13 | 0.006038 |
Target: 5'- cGUUUACUACGUUCCCACCAAACCCCCu -3' miRNA: 3'- -CAAAUGAUGCAAGGGUGGUUUGGGGG- -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 69119 | 0.7 | 0.958913 |
Target: 5'- ---aACUuuguUGUUCUUACCAcuCCCCCa -3' miRNA: 3'- caaaUGAu---GCAAGGGUGGUuuGGGGG- -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 74987 | 0.76 | 0.732971 |
Target: 5'- ---cGCUuaaaUCCCACCGAACCCCUa -3' miRNA: 3'- caaaUGAugcaAGGGUGGUUUGGGGG- -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 76772 | 0.66 | 0.997753 |
Target: 5'- -aUUGCgcgaGUUCCCAagguauCCCCCa -3' miRNA: 3'- caAAUGaug-CAAGGGUgguuu-GGGGG- -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 79377 | 0.67 | 0.990716 |
Target: 5'- ---gGCUaACG-UCCUaaauaAUCAAACCCCCu -3' miRNA: 3'- caaaUGA-UGCaAGGG-----UGGUUUGGGGG- -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 83138 | 0.66 | 0.995578 |
Target: 5'- ----uUUGCGUUCCCACCAcaauACCg-- -3' miRNA: 3'- caaauGAUGCAAGGGUGGUu---UGGggg -5' |
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2086 | 3' | -49.2 | NC_001348.1 | + | 90666 | 0.71 | 0.931125 |
Target: 5'- ---gGCUGCGUUagaCGCCuGGCCCCUu -3' miRNA: 3'- caaaUGAUGCAAgg-GUGGuUUGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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