miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2086 3' -49.2 NC_001348.1 + 66450 1.13 0.006038
Target:  5'- cGUUUACUACGUUCCCACCAAACCCCCu -3'
miRNA:   3'- -CAAAUGAUGCAAGGGUGGUUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 93677 0.66 0.997753
Target:  5'- aUUUAUUcCGgacaUCCCAUCGGccAUCCCCg -3'
miRNA:   3'- cAAAUGAuGCa---AGGGUGGUU--UGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 108833 0.66 0.997713
Target:  5'- ---aACgaucuCGUguucccgUCCCACCAuGACCCCg -3'
miRNA:   3'- caaaUGau---GCA-------AGGGUGGU-UUGGGGg -5'
2086 3' -49.2 NC_001348.1 + 121477 0.66 0.99763
Target:  5'- ---gACaGCGUUCCCGCUAagggggcaaaggcgGACCUgCCg -3'
miRNA:   3'- caaaUGaUGCAAGGGUGGU--------------UUGGG-GG- -5'
2086 3' -49.2 NC_001348.1 + 98583 0.66 0.997175
Target:  5'- aUUU-CUAgGUUuugucuuaaauacaCCCGCCAugagcaucucugGACCCCCa -3'
miRNA:   3'- cAAAuGAUgCAA--------------GGGUGGU------------UUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 46662 0.66 0.996239
Target:  5'- ---aGCaGCGU--CCGCUGAACCCCUa -3'
miRNA:   3'- caaaUGaUGCAagGGUGGUUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 29019 0.66 0.996239
Target:  5'- -aUUugUACcccCCCACacAACCCCCu -3'
miRNA:   3'- caAAugAUGcaaGGGUGguUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 50824 0.66 0.996239
Target:  5'- ---gACUGugacaGUgCCCACgGGGCCCCUg -3'
miRNA:   3'- caaaUGAUg----CAaGGGUGgUUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 91068 0.66 0.995853
Target:  5'- ----uCUACGUUuucccCCCcuauagagcgggaagGCCAAACCUCCg -3'
miRNA:   3'- caaauGAUGCAA-----GGG---------------UGGUUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 83138 0.66 0.995578
Target:  5'- ----uUUGCGUUCCCACCAcaauACCg-- -3'
miRNA:   3'- caaauGAUGCAAGGGUGGUu---UGGggg -5'
2086 3' -49.2 NC_001348.1 + 92573 0.66 0.995578
Target:  5'- ---gACUGCGcugCUCAucUCAAGCCCCUu -3'
miRNA:   3'- caaaUGAUGCaa-GGGU--GGUUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 65214 0.81 0.498999
Target:  5'- uGUUUAC-GC-UUCCCGCUGAACCCCCc -3'
miRNA:   3'- -CAAAUGaUGcAAGGGUGGUUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 74987 0.76 0.732971
Target:  5'- ---cGCUuaaaUCCCACCGAACCCCUa -3'
miRNA:   3'- caaaUGAugcaAGGGUGGUUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 90666 0.71 0.931125
Target:  5'- ---gGCUGCGUUagaCGCCuGGCCCCUu -3'
miRNA:   3'- caaaUGAUGCAAgg-GUGGuUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 62547 0.71 0.936413
Target:  5'- -aUUAUUAcCGcuuuuaaacUUCCCAUCAAACCCCg -3'
miRNA:   3'- caAAUGAU-GC---------AAGGGUGGUUUGGGGg -5'
2086 3' -49.2 NC_001348.1 + 185 0.69 0.972423
Target:  5'- ---cACUAC--UCCCGCCGaccuggGACCCCg -3'
miRNA:   3'- caaaUGAUGcaAGGGUGGU------UUGGGGg -5'
2086 3' -49.2 NC_001348.1 + 79377 0.67 0.990716
Target:  5'- ---gGCUaACG-UCCUaaauaAUCAAACCCCCu -3'
miRNA:   3'- caaaUGA-UGCaAGGG-----UGGUUUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 110837 0.67 0.990716
Target:  5'- --cUACUuuaAUGgaagugUCCCAUCG-ACCCCCu -3'
miRNA:   3'- caaAUGA---UGCa-----AGGGUGGUuUGGGGG- -5'
2086 3' -49.2 NC_001348.1 + 115887 0.74 0.821066
Target:  5'- --aUACgcaACGUUCCCGugauaauuCCGAACCCCa -3'
miRNA:   3'- caaAUGa--UGCAAGGGU--------GGUUUGGGGg -5'
2086 3' -49.2 NC_001348.1 + 76772 0.66 0.997753
Target:  5'- -aUUGCgcgaGUUCCCAagguauCCCCCa -3'
miRNA:   3'- caAAUGaug-CAAGGGUgguuu-GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.