miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2087 3' -44.2 NC_001348.1 + 82167 0.66 0.999996
Target:  5'- aUAUCGCCAugguUUCAaaacuACaUUGGGggUACa -3'
miRNA:   3'- -AUAGUGGUu---GAGU-----UGcAACUCuuAUG- -5'
2087 3' -44.2 NC_001348.1 + 108503 0.66 0.999992
Target:  5'- cGUCuCCAACaggaGACGcgGGGGAUACa -3'
miRNA:   3'- aUAGuGGUUGag--UUGCaaCUCUUAUG- -5'
2087 3' -44.2 NC_001348.1 + 49772 0.66 0.999992
Target:  5'- aGUCGCCAAUUaacguuaagCGACGUUGAaauuGAcUGCa -3'
miRNA:   3'- aUAGUGGUUGA---------GUUGCAACU----CUuAUG- -5'
2087 3' -44.2 NC_001348.1 + 121289 0.66 0.999992
Target:  5'- cGUCuCCAACaggaGACGcgGGGGAUACa -3'
miRNA:   3'- aUAGuGGUUGag--UUGCaaCUCUUAUG- -5'
2087 3' -44.2 NC_001348.1 + 89771 0.67 0.999977
Target:  5'- -uUCGCUGGCUCAACuaauauUUGAGGuuAUGCg -3'
miRNA:   3'- auAGUGGUUGAGUUGc-----AACUCU--UAUG- -5'
2087 3' -44.2 NC_001348.1 + 116247 0.67 0.999956
Target:  5'- --gCACCGAUUCAGCGgauuuaugGAGuccgGUACa -3'
miRNA:   3'- auaGUGGUUGAGUUGCaa------CUCu---UAUG- -5'
2087 3' -44.2 NC_001348.1 + 639 0.67 0.999955
Target:  5'- aUGUCACCAAagcCAACGUcgccaucUG-GAGUACu -3'
miRNA:   3'- -AUAGUGGUUga-GUUGCA-------ACuCUUAUG- -5'
2087 3' -44.2 NC_001348.1 + 123055 0.68 0.999816
Target:  5'- aAUCGCC-GCUCGGCGUccgggcgGAGGAgaccgACg -3'
miRNA:   3'- aUAGUGGuUGAGUUGCAa------CUCUUa----UG- -5'
2087 3' -44.2 NC_001348.1 + 106737 0.68 0.999816
Target:  5'- aAUCGCC-GCUCGGCGUccgggcgGAGGAgaccgACg -3'
miRNA:   3'- aUAGUGGuUGAGUUGCAa------CUCUUa----UG- -5'
2087 3' -44.2 NC_001348.1 + 96806 0.7 0.998499
Target:  5'- --cCACCAACaguaaaCAACGgccgUGAGAAUAUg -3'
miRNA:   3'- auaGUGGUUGa-----GUUGCa---ACUCUUAUG- -5'
2087 3' -44.2 NC_001348.1 + 66648 1.11 0.024734
Target:  5'- uUAUCACCAACUCAACGUUGAGAAUACa -3'
miRNA:   3'- -AUAGUGGUUGAGUUGCAACUCUUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.