Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20875 | 5' | -54.4 | NC_004689.1 | + | 39540 | 0.73 | 0.462914 |
Target: 5'- cUUGCGCGGUUCCugcaugagcaGCGCAucCGUaaGUGCgCCa -3' miRNA: 3'- -AGCGCGCUAAGG----------UGCGU--GCA--UACG-GG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 38365 | 0.73 | 0.462914 |
Target: 5'- gUGUGCGAUcagcgcaucaUCCGCGCugauUAUGCCCg -3' miRNA: 3'- aGCGCGCUA----------AGGUGCGugc-AUACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 36267 | 0.72 | 0.523533 |
Target: 5'- aCGCGCGAacaaaCCAgGCGCGUAcGCgCg -3' miRNA: 3'- aGCGCGCUaa---GGUgCGUGCAUaCGgG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 55078 | 0.71 | 0.544427 |
Target: 5'- gCGCGUGAUcaUUCACGUugccgugguuggACGUucccaGUGCCCa -3' miRNA: 3'- aGCGCGCUA--AGGUGCG------------UGCA-----UACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 8343 | 0.71 | 0.565585 |
Target: 5'- aCGCGCGGauUUCaCugGCAguuCGUA-GCCCc -3' miRNA: 3'- aGCGCGCU--AAG-GugCGU---GCAUaCGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 13015 | 0.7 | 0.586951 |
Target: 5'- aUCGCaGCaccgCCGCGCugGcgaAUGCCCg -3' miRNA: 3'- -AGCG-CGcuaaGGUGCGugCa--UACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 32343 | 0.7 | 0.619251 |
Target: 5'- cCGUGCuuGAUUUCACuGCugGUcgGCCa -3' miRNA: 3'- aGCGCG--CUAAGGUG-CGugCAuaCGGg -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 64873 | 0.69 | 0.673174 |
Target: 5'- cUGCgGUGAccugUCCcuuGCGCACGUcgGUCCa -3' miRNA: 3'- aGCG-CGCUa---AGG---UGCGUGCAuaCGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 52170 | 0.69 | 0.683886 |
Target: 5'- cUGCGUGAcUUCCucgacGCGCAUGUA-GCCg -3' miRNA: 3'- aGCGCGCU-AAGG-----UGCGUGCAUaCGGg -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 43720 | 0.69 | 0.694552 |
Target: 5'- ---aGgGAga--GCGCGCGUGUGCCCg -3' miRNA: 3'- agcgCgCUaaggUGCGUGCAUACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 20161 | 0.69 | 0.694552 |
Target: 5'- -aGCGcCGAccaguUUCCACGCgACGaccagGCCCa -3' miRNA: 3'- agCGC-GCU-----AAGGUGCG-UGCaua--CGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 37686 | 0.68 | 0.701983 |
Target: 5'- cUCGgGCGGcgUCCACcugucgcgcauuguGCcuACGUGUGCUCa -3' miRNA: 3'- -AGCgCGCUa-AGGUG--------------CG--UGCAUACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 40088 | 0.68 | 0.705158 |
Target: 5'- cUUGCGCGucuUUCCgAUGCGCuGaAUGUCCg -3' miRNA: 3'- -AGCGCGCu--AAGG-UGCGUG-CaUACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 63121 | 0.68 | 0.715696 |
Target: 5'- cUGCGCGcAUUCCAUGCGaaucgagccUGUuUGCCg -3' miRNA: 3'- aGCGCGC-UAAGGUGCGU---------GCAuACGGg -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 38592 | 0.68 | 0.715696 |
Target: 5'- uUCGUuuuGCGucUUCACGCGCGUccaccaacUGCCCa -3' miRNA: 3'- -AGCG---CGCuaAGGUGCGUGCAu-------ACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 39690 | 0.68 | 0.726155 |
Target: 5'- cCGUGuCGAUUUCGUGCGCGaucAUGUCCa -3' miRNA: 3'- aGCGC-GCUAAGGUGCGUGCa--UACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 8697 | 0.68 | 0.726155 |
Target: 5'- gUCGUa-GAUUCgACGCgaACGUAUGCgCCg -3' miRNA: 3'- -AGCGcgCUAAGgUGCG--UGCAUACG-GG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 36450 | 0.68 | 0.742696 |
Target: 5'- cUCGCGCGuggaaucgcaUCCGCGCACGcagggaaucgcGCCUu -3' miRNA: 3'- -AGCGCGCua--------AGGUGCGUGCaua--------CGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 64006 | 0.68 | 0.74679 |
Target: 5'- aUGCGCGcacccuGUUCCACGCA-GUAgGCgCg -3' miRNA: 3'- aGCGCGC------UAAGGUGCGUgCAUaCGgG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 15869 | 0.67 | 0.766977 |
Target: 5'- aCGCGC--UUUC-CGCugGUAUccgGCCCa -3' miRNA: 3'- aGCGCGcuAAGGuGCGugCAUA---CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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