Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20875 | 5' | -54.4 | NC_004689.1 | + | 1766 | 0.66 | 0.814923 |
Target: 5'- cCGCGUccGGUgaacagcuucUUCACGCgaGCGUucGUGCCCu -3' miRNA: 3'- aGCGCG--CUA----------AGGUGCG--UGCA--UACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 8343 | 0.71 | 0.565585 |
Target: 5'- aCGCGCGGauUUCaCugGCAguuCGUA-GCCCc -3' miRNA: 3'- aGCGCGCU--AAG-GugCGU---GCAUaCGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 8697 | 0.68 | 0.726155 |
Target: 5'- gUCGUa-GAUUCgACGCgaACGUAUGCgCCg -3' miRNA: 3'- -AGCGcgCUAAGgUGCG--UGCAUACG-GG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 11454 | 0.67 | 0.805664 |
Target: 5'- cUGCGCcaccGAgaaccgCCGCGCccugaGCGUugAUGCCCa -3' miRNA: 3'- aGCGCG----CUaa----GGUGCG-----UGCA--UACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 12515 | 0.66 | 0.823997 |
Target: 5'- -aGCGCGGUguugCCcgacCGCACGUaAUGCg- -3' miRNA: 3'- agCGCGCUAa---GGu---GCGUGCA-UACGgg -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 13015 | 0.7 | 0.586951 |
Target: 5'- aUCGCaGCaccgCCGCGCugGcgaAUGCCCg -3' miRNA: 3'- -AGCG-CGcuaaGGUGCGugCa--UACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 15869 | 0.67 | 0.766977 |
Target: 5'- aCGCGC--UUUC-CGCugGUAUccgGCCCa -3' miRNA: 3'- aGCGCGcuAAGGuGCGugCAUA---CGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 20161 | 0.69 | 0.694552 |
Target: 5'- -aGCGcCGAccaguUUCCACGCgACGaccagGCCCa -3' miRNA: 3'- agCGC-GCU-----AAGGUGCG-UGCaua--CGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 32343 | 0.7 | 0.619251 |
Target: 5'- cCGUGCuuGAUUUCACuGCugGUcgGCCa -3' miRNA: 3'- aGCGCG--CUAAGGUG-CGugCAuaCGGg -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 36231 | 0.66 | 0.831999 |
Target: 5'- aUCGCGCGcAUUacgcgaucguuuaUCGCGCACGUuaAUGUa- -3' miRNA: 3'- -AGCGCGC-UAA-------------GGUGCGUGCA--UACGgg -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 36267 | 0.72 | 0.523533 |
Target: 5'- aCGCGCGAacaaaCCAgGCGCGUAcGCgCg -3' miRNA: 3'- aGCGCGCUaa---GGUgCGUGCAUaCGgG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 36450 | 0.68 | 0.742696 |
Target: 5'- cUCGCGCGuggaaucgcaUCCGCGCACGcagggaaucgcGCCUu -3' miRNA: 3'- -AGCGCGCua--------AGGUGCGUGCaua--------CGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 37120 | 0.66 | 0.849182 |
Target: 5'- cCGCGUGGUgagcacaucCCACGCcuucgcggucuucGCGggaaccuUGCCCg -3' miRNA: 3'- aGCGCGCUAa--------GGUGCG-------------UGCau-----ACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 37470 | 0.67 | 0.805664 |
Target: 5'- gCGUGCGGccaUACGCGCGcaAUGCCg -3' miRNA: 3'- aGCGCGCUaagGUGCGUGCa-UACGGg -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 37686 | 0.68 | 0.701983 |
Target: 5'- cUCGgGCGGcgUCCACcugucgcgcauuguGCcuACGUGUGCUCa -3' miRNA: 3'- -AGCgCGCUa-AGGUG--------------CG--UGCAUACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 38365 | 0.73 | 0.462914 |
Target: 5'- gUGUGCGAUcagcgcaucaUCCGCGCugauUAUGCCCg -3' miRNA: 3'- aGCGCGCUA----------AGGUGCGugc-AUACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 38527 | 0.66 | 0.823997 |
Target: 5'- -aGCcCGGUUCCGCGUAUccaacGCCCa -3' miRNA: 3'- agCGcGCUAAGGUGCGUGcaua-CGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 38592 | 0.68 | 0.715696 |
Target: 5'- uUCGUuuuGCGucUUCACGCGCGUccaccaacUGCCCa -3' miRNA: 3'- -AGCG---CGCuaAGGUGCGUGCAu-------ACGGG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 39540 | 0.73 | 0.462914 |
Target: 5'- cUUGCGCGGUUCCugcaugagcaGCGCAucCGUaaGUGCgCCa -3' miRNA: 3'- -AGCGCGCUAAGG----------UGCGU--GCA--UACG-GG- -5' |
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20875 | 5' | -54.4 | NC_004689.1 | + | 39690 | 0.68 | 0.726155 |
Target: 5'- cCGUGuCGAUUUCGUGCGCGaucAUGUCCa -3' miRNA: 3'- aGCGC-GCUAAGGUGCGUGCa--UACGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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