Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2088 | 5' | -54.8 | NC_001348.1 | + | 2820 | 0.7 | 0.68119 |
Target: 5'- uGGaCGGGCGucAGAaaGAUGCCcGGCCCa -3' miRNA: 3'- uUC-GCCCGC--UUUgcCUAUGGuUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 16344 | 0.66 | 0.915182 |
Target: 5'- cGAGCGcGUGAggGAUGGAUGucuuauuCCAAcGCCCg -3' miRNA: 3'- -UUCGCcCGCU--UUGCCUAU-------GGUU-CGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 20699 | 0.69 | 0.742608 |
Target: 5'- gAGGUGGGCGcGACGGcgggAUCGGGCUUu -3' miRNA: 3'- -UUCGCCCGCuUUGCCua--UGGUUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 20741 | 0.69 | 0.742608 |
Target: 5'- gAGGUGGGCGcGACGGcgggAUCGGGCUUu -3' miRNA: 3'- -UUCGCCCGCuUUGCCua--UGGUUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 20783 | 0.69 | 0.742608 |
Target: 5'- gAGGUGGGCGcGACGGcgggAUCGGGCUUu -3' miRNA: 3'- -UUCGCCCGCuUUGCCua--UGGUUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 20825 | 0.69 | 0.742608 |
Target: 5'- gAGGUGGGCGcGACGGcgggAUCGGGCUUu -3' miRNA: 3'- -UUCGCCCGCuUUGCCua--UGGUUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 20867 | 0.69 | 0.742608 |
Target: 5'- gAGGUGGGCGcGACGGcgggAUCGGGCUUu -3' miRNA: 3'- -UUCGCCCGCuUUGCCua--UGGUUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 20909 | 0.69 | 0.742608 |
Target: 5'- gAGGUGGGCGcGACGGcgggAUCGGGCUUu -3' miRNA: 3'- -UUCGCCCGCuUUGCCua--UGGUUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 38860 | 0.66 | 0.889954 |
Target: 5'- cAGGCGGuuGAc-UGGAugUACCAAGCUCg -3' miRNA: 3'- -UUCGCCcgCUuuGCCU--AUGGUUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 41560 | 0.68 | 0.835768 |
Target: 5'- -cGCGGGCugcGCGGGcUGCgCGGGCCg -3' miRNA: 3'- uuCGCCCGcuuUGCCU-AUG-GUUCGGg -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 41596 | 0.68 | 0.827187 |
Target: 5'- -cGCGGGCuGGACGGucUGCgCGGGCUg -3' miRNA: 3'- uuCGCCCGcUUUGCCu-AUG-GUUCGGg -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 48752 | 0.73 | 0.535127 |
Target: 5'- cAAGUGGGCGAAAUguaGGAUAUaaagGAGCCa -3' miRNA: 3'- -UUCGCCCGCUUUG---CCUAUGg---UUCGGg -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 51986 | 0.72 | 0.601418 |
Target: 5'- uAGCGGGaugaccgaagccaaGGAugGGggACCGGGUCCa -3' miRNA: 3'- uUCGCCCg-------------CUUugCCuaUGGUUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 60967 | 0.69 | 0.752545 |
Target: 5'- cAGGCGGGUG---UGGAgauCCAuauGGCCCg -3' miRNA: 3'- -UUCGCCCGCuuuGCCUau-GGU---UCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 70706 | 0.66 | 0.88289 |
Target: 5'- -uGgGGGUGAuACGGAcuuacUAUUAAGCUCu -3' miRNA: 3'- uuCgCCCGCUuUGCCU-----AUGGUUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 73790 | 1.09 | 0.002657 |
Target: 5'- uAAGCGGGCGAAACGGAUACCAAGCCCu -3' miRNA: 3'- -UUCGCCCGCUUUGCCUAUGGUUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 97667 | 0.66 | 0.90336 |
Target: 5'- cAGCGGuuaaUGggGCGGGUGCCGGGauugaCUg -3' miRNA: 3'- uUCGCCc---GCuuUGCCUAUGGUUCg----GG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 104492 | 0.66 | 0.889954 |
Target: 5'- uAGCGGGCGGuAGCGGcaccuCCGAcGCUUc -3' miRNA: 3'- uUCGCCCGCU-UUGCCuau--GGUU-CGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 105118 | 0.68 | 0.827187 |
Target: 5'- cGGGCGGGCGAcgGGCGGGcuggucggACCccccCCCg -3' miRNA: 3'- -UUCGCCCGCU--UUGCCUa-------UGGuuc-GGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 105426 | 0.66 | 0.90336 |
Target: 5'- gAGGgGGGCGGggacGACGGGgacgcACCGGGgUCa -3' miRNA: 3'- -UUCgCCCGCU----UUGCCUa----UGGUUCgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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