Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2088 | 5' | -54.8 | NC_001348.1 | + | 105708 | 0.72 | 0.57634 |
Target: 5'- gAAGaCGGGuCGAAGCGcGGcacCCAGGCCCc -3' miRNA: 3'- -UUC-GCCC-GCUUUGC-CUau-GGUUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 106682 | 0.66 | 0.909072 |
Target: 5'- cAGaCGGGCGAugguuuCGGGgguacaguacgccUugCGAGCCUg -3' miRNA: 3'- uUC-GCCCGCUuu----GCCU-------------AugGUUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 107005 | 0.71 | 0.660272 |
Target: 5'- aAGGCcaa-GAGGCGGGUAuCCGAGCCCg -3' miRNA: 3'- -UUCGcccgCUUUGCCUAU-GGUUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 108544 | 0.68 | 0.835768 |
Target: 5'- -uGCGGGaaCGGAGgGGucGUACCucuGCCCg -3' miRNA: 3'- uuCGCCC--GCUUUgCC--UAUGGuu-CGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 113287 | 0.67 | 0.852336 |
Target: 5'- aAAGCGGGUcaacgucaaGGAACGGccACCGAGgcaaCCg -3' miRNA: 3'- -UUCGCCCG---------CUUUGCCuaUGGUUCg---GG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 121248 | 0.68 | 0.835768 |
Target: 5'- -uGCGGGaaCGGAGgGGucGUACCucuGCCCg -3' miRNA: 3'- uuCGCCC--GCUUUgCC--UAUGGuu-CGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 122786 | 0.71 | 0.660272 |
Target: 5'- aAGGCcaa-GAGGCGGGUAuCCGAGCCCg -3' miRNA: 3'- -UUCGcccgCUUUGCCUAU-GGUUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 123110 | 0.66 | 0.909072 |
Target: 5'- cAGaCGGGCGAugguuuCGGGgguacaguacgccUugCGAGCCUg -3' miRNA: 3'- uUC-GCCCGCUuu----GCCU-------------AugGUUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 124084 | 0.72 | 0.57634 |
Target: 5'- gAAGaCGGGuCGAAGCGcGGcacCCAGGCCCc -3' miRNA: 3'- -UUC-GCCC-GCUUUGC-CUau-GGUUCGGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 124366 | 0.66 | 0.90336 |
Target: 5'- gAGGgGGGCGGggacGACGGGgacgcACCGGGgUCa -3' miRNA: 3'- -UUCgCCCGCU----UUGCCUa----UGGUUCgGG- -5' |
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2088 | 5' | -54.8 | NC_001348.1 | + | 124674 | 0.68 | 0.827187 |
Target: 5'- cGGGCGGGCGAcgGGCGGGcuggucggACCccccCCCg -3' miRNA: 3'- -UUCGCCCGCU--UUGCCUa-------UGGuuc-GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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