miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2088 5' -54.8 NC_001348.1 + 20867 0.69 0.742608
Target:  5'- gAGGUGGGCGcGACGGcgggAUCGGGCUUu -3'
miRNA:   3'- -UUCGCCCGCuUUGCCua--UGGUUCGGG- -5'
2088 5' -54.8 NC_001348.1 + 20825 0.69 0.742608
Target:  5'- gAGGUGGGCGcGACGGcgggAUCGGGCUUu -3'
miRNA:   3'- -UUCGCCCGCuUUGCCua--UGGUUCGGG- -5'
2088 5' -54.8 NC_001348.1 + 20783 0.69 0.742608
Target:  5'- gAGGUGGGCGcGACGGcgggAUCGGGCUUu -3'
miRNA:   3'- -UUCGCCCGCuUUGCCua--UGGUUCGGG- -5'
2088 5' -54.8 NC_001348.1 + 2820 0.7 0.68119
Target:  5'- uGGaCGGGCGucAGAaaGAUGCCcGGCCCa -3'
miRNA:   3'- uUC-GCCCGC--UUUgcCUAUGGuUCGGG- -5'
2088 5' -54.8 NC_001348.1 + 122786 0.71 0.660272
Target:  5'- aAGGCcaa-GAGGCGGGUAuCCGAGCCCg -3'
miRNA:   3'- -UUCGcccgCUUUGCCUAU-GGUUCGGG- -5'
2088 5' -54.8 NC_001348.1 + 107005 0.71 0.660272
Target:  5'- aAGGCcaa-GAGGCGGGUAuCCGAGCCCg -3'
miRNA:   3'- -UUCGcccgCUUUGCCUAU-GGUUCGGG- -5'
2088 5' -54.8 NC_001348.1 + 51986 0.72 0.601418
Target:  5'- uAGCGGGaugaccgaagccaaGGAugGGggACCGGGUCCa -3'
miRNA:   3'- uUCGCCCg-------------CUUugCCuaUGGUUCGGG- -5'
2088 5' -54.8 NC_001348.1 + 105708 0.72 0.57634
Target:  5'- gAAGaCGGGuCGAAGCGcGGcacCCAGGCCCc -3'
miRNA:   3'- -UUC-GCCC-GCUUUGC-CUau-GGUUCGGG- -5'
2088 5' -54.8 NC_001348.1 + 124084 0.72 0.57634
Target:  5'- gAAGaCGGGuCGAAGCGcGGcacCCAGGCCCc -3'
miRNA:   3'- -UUC-GCCC-GCUUUGC-CUau-GGUUCGGG- -5'
2088 5' -54.8 NC_001348.1 + 48752 0.73 0.535127
Target:  5'- cAAGUGGGCGAAAUguaGGAUAUaaagGAGCCa -3'
miRNA:   3'- -UUCGCCCGCUUUG---CCUAUGg---UUCGGg -5'
2088 5' -54.8 NC_001348.1 + 73790 1.09 0.002657
Target:  5'- uAAGCGGGCGAAACGGAUACCAAGCCCu -3'
miRNA:   3'- -UUCGCCCGCUUUGCCUAUGGUUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.