Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21040 | 3' | -52.6 | NC_004745.1 | + | 8235 | 0.71 | 0.387317 |
Target: 5'- -uGCCUGAUGcugugcGCCGGU--UGCaCCAGCg -3' miRNA: 3'- agUGGACUAU------UGGCCGcuAUG-GGUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 4168 | 0.66 | 0.718958 |
Target: 5'- uUCACCguugAACCGuCGGUcACCCAGa -3' miRNA: 3'- -AGUGGacuaUUGGCcGCUA-UGGGUCg -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 8767 | 0.66 | 0.707593 |
Target: 5'- -aGCCUGAUgcuGACCGaGCGAacgcUGgUCAGUg -3' miRNA: 3'- agUGGACUA---UUGGC-CGCU----AUgGGUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 27333 | 0.66 | 0.673052 |
Target: 5'- aUCACCUGuAUGgucauguuGCUGGCGcUGCaCgAGCu -3' miRNA: 3'- -AGUGGAC-UAU--------UGGCCGCuAUG-GgUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 19899 | 0.66 | 0.673052 |
Target: 5'- -gGCCaguuuUGAgaaaAACCGGCucGGUacuGCCCAGCa -3' miRNA: 3'- agUGG-----ACUa---UUGGCCG--CUA---UGGGUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 4313 | 0.67 | 0.649785 |
Target: 5'- cCACCgacaccGCCGGUGGcACCgAGCg -3' miRNA: 3'- aGUGGacuau-UGGCCGCUaUGGgUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 7604 | 0.67 | 0.619443 |
Target: 5'- cCACCUGGgcgauuCUGGCGAugguuaucuguguggUugCCGGUg -3' miRNA: 3'- aGUGGACUauu---GGCCGCU---------------AugGGUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 845 | 0.68 | 0.603127 |
Target: 5'- cCAgUCUGAUGaccuuACCGGUGGUGCUgUAGCg -3' miRNA: 3'- aGU-GGACUAU-----UGGCCGCUAUGG-GUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 1685 | 0.69 | 0.534165 |
Target: 5'- cCACCggccaccACCGGCGGUGCC-AGUa -3' miRNA: 3'- aGUGGacuau--UGGCCGCUAUGGgUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 10124 | 0.71 | 0.406672 |
Target: 5'- -aGCCaGAguAUCGGCGAUAUCCuGCg -3' miRNA: 3'- agUGGaCUauUGGCCGCUAUGGGuCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 3524 | 0.7 | 0.446103 |
Target: 5'- gUUAUCUGGUGggGCUGGCcgucaccGAUgACCCGGCa -3' miRNA: 3'- -AGUGGACUAU--UGGCCG-------CUA-UGGGUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 5947 | 0.7 | 0.457606 |
Target: 5'- aUCACCUGAcacUGcACCGGCGuccaccGCCCGa- -3' miRNA: 3'- -AGUGGACU---AU-UGGCCGCua----UGGGUcg -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 5423 | 0.7 | 0.468199 |
Target: 5'- gCGUCUGGauACCGGCGAUAUugCCGGUg -3' miRNA: 3'- aGUGGACUauUGGCCGCUAUG--GGUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 4883 | 0.7 | 0.475689 |
Target: 5'- gCAUC-GGUAaccuGCCGGCGGUAcgcgucccguacuuCCCGGCg -3' miRNA: 3'- aGUGGaCUAU----UGGCCGCUAU--------------GGGUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 9671 | 0.7 | 0.478917 |
Target: 5'- -uGCCgggGAUuuauuCCGGCGAUaACCCcGCg -3' miRNA: 3'- agUGGa--CUAuu---GGCCGCUA-UGGGuCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 10203 | 0.66 | 0.718958 |
Target: 5'- aUCACCcgUGAgccGACCGGUG-UGCgCAGg -3' miRNA: 3'- -AGUGG--ACUa--UUGGCCGCuAUGgGUCg -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 7462 | 0.77 | 0.177324 |
Target: 5'- cUCACgCUGAccgUAACCGGC---ACCCGGCa -3' miRNA: 3'- -AGUG-GACU---AUUGGCCGcuaUGGGUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 9356 | 0.7 | 0.447142 |
Target: 5'- aUCAUCUGuacauccucACCGGUGAaGCCgAGCa -3' miRNA: 3'- -AGUGGACuau------UGGCCGCUaUGGgUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 5976 | 0.7 | 0.447142 |
Target: 5'- uUCACCcucacUGACCGGCGugccGCCCuGGCg -3' miRNA: 3'- -AGUGGacu--AUUGGCCGCua--UGGG-UCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 5574 | 0.69 | 0.51956 |
Target: 5'- cCACCUccucGGUGAacauguaCGGCGGggugcggcgguguuUACCCGGCa -3' miRNA: 3'- aGUGGA----CUAUUg------GCCGCU--------------AUGGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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