miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21042 3' -57 NC_004745.1 + 9032 0.66 0.486393
Target:  5'- uUCGCCAgcUCugCAcUCAGccGCCGaCGCCc -3'
miRNA:   3'- -GGUGGU--AGugGU-AGUCu-CGGCgGCGG- -5'
21042 3' -57 NC_004745.1 + 28807 0.66 0.486393
Target:  5'- aCACCGUCAUCAacCAGAuuaagcacuGCUGCgGCg -3'
miRNA:   3'- gGUGGUAGUGGUa-GUCU---------CGGCGgCGg -5'
21042 3' -57 NC_004745.1 + 28657 0.66 0.486393
Target:  5'- aUCGCCG-CGCC-UCGGAGUC-CUGUCa -3'
miRNA:   3'- -GGUGGUaGUGGuAGUCUCGGcGGCGG- -5'
21042 3' -57 NC_004745.1 + 10835 0.66 0.486393
Target:  5'- -uGCCuAUCAgUAUCAuGGCCGCaguGCCg -3'
miRNA:   3'- ggUGG-UAGUgGUAGUcUCGGCGg--CGG- -5'
21042 3' -57 NC_004745.1 + 7211 0.66 0.47596
Target:  5'- gCCuCCgGUCGCUAUCAGcAGCUuuaccuguucugGCCGCa -3'
miRNA:   3'- -GGuGG-UAGUGGUAGUC-UCGG------------CGGCGg -5'
21042 3' -57 NC_004745.1 + 4056 0.66 0.46564
Target:  5'- aCGCCGgucagcaguUCGUCAUCAGGGCgucaCCGCCa -3'
miRNA:   3'- gGUGGU---------AGUGGUAGUCUCGgc--GGCGG- -5'
21042 3' -57 NC_004745.1 + 3384 0.66 0.455437
Target:  5'- aUCGCCAUaacgcuuaaaaaUACCGUCAG-GCaggauGCCGCg -3'
miRNA:   3'- -GGUGGUA------------GUGGUAGUCuCGg----CGGCGg -5'
21042 3' -57 NC_004745.1 + 17867 0.67 0.428509
Target:  5'- aCCACuccauugacagagCAUCAUCAUCAaGGCCgaggucuaccggugcGCUGCCg -3'
miRNA:   3'- -GGUG-------------GUAGUGGUAGUcUCGG---------------CGGCGG- -5'
21042 3' -57 NC_004745.1 + 68 0.67 0.425575
Target:  5'- gCACCAcCGCCAgcgcgCAGuGCUuuccCCGCCu -3'
miRNA:   3'- gGUGGUaGUGGUa----GUCuCGGc---GGCGG- -5'
21042 3' -57 NC_004745.1 + 6332 0.67 0.406328
Target:  5'- -uGCUuUCACCGUCGauGUCGuCCGCCg -3'
miRNA:   3'- ggUGGuAGUGGUAGUcuCGGC-GGCGG- -5'
21042 3' -57 NC_004745.1 + 28719 0.67 0.396911
Target:  5'- aCCGgcucCCA-CACCuUCuGAGCaCGCCGCa -3'
miRNA:   3'- -GGU----GGUaGUGGuAGuCUCG-GCGGCGg -5'
21042 3' -57 NC_004745.1 + 10905 0.68 0.378505
Target:  5'- gCCugCGUCACCAUCucuGuGCUGUCa-- -3'
miRNA:   3'- -GGugGUAGUGGUAGu--CuCGGCGGcgg -5'
21042 3' -57 NC_004745.1 + 7575 0.68 0.36068
Target:  5'- cCCGCagagCGUgGCCGUCAGuuUUGUCGCCa -3'
miRNA:   3'- -GGUG----GUAgUGGUAGUCucGGCGGCGG- -5'
21042 3' -57 NC_004745.1 + 8837 0.68 0.35199
Target:  5'- -aACCccCGCCGcCGGAGCCGgucacCCGCCc -3'
miRNA:   3'- ggUGGuaGUGGUaGUCUCGGC-----GGCGG- -5'
21042 3' -57 NC_004745.1 + 9700 0.68 0.35199
Target:  5'- gCGCCGUCugCGUCGGcggauGCC-CUGCa -3'
miRNA:   3'- gGUGGUAGugGUAGUCu----CGGcGGCGg -5'
21042 3' -57 NC_004745.1 + 9375 0.69 0.303007
Target:  5'- aCACC-UCAUCGUCAcauuGCCGCCGgUa -3'
miRNA:   3'- gGUGGuAGUGGUAGUcu--CGGCGGCgG- -5'
21042 3' -57 NC_004745.1 + 19535 0.69 0.295372
Target:  5'- uUCGCCAgCGCCAUauucagcgugacCGGcGuuGCCGCCu -3'
miRNA:   3'- -GGUGGUaGUGGUA------------GUCuCggCGGCGG- -5'
21042 3' -57 NC_004745.1 + 9598 0.7 0.287888
Target:  5'- gCCACUGaaGCCAgUCAGuGCacauGCCGCCg -3'
miRNA:   3'- -GGUGGUagUGGU-AGUCuCGg---CGGCGG- -5'
21042 3' -57 NC_004745.1 + 28471 0.7 0.280553
Target:  5'- -uGCCAg-ACUGUCAGAGUCGCCcguaGCCc -3'
miRNA:   3'- ggUGGUagUGGUAGUCUCGGCGG----CGG- -5'
21042 3' -57 NC_004745.1 + 19953 0.7 0.280553
Target:  5'- -aACCAUUucggggaggagGCCAgcucAGCCGCCGCCg -3'
miRNA:   3'- ggUGGUAG-----------UGGUagucUCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.