Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21042 | 3' | -57 | NC_004745.1 | + | 68 | 0.67 | 0.425575 |
Target: 5'- gCACCAcCGCCAgcgcgCAGuGCUuuccCCGCCu -3' miRNA: 3'- gGUGGUaGUGGUa----GUCuCGGc---GGCGG- -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 3384 | 0.66 | 0.455437 |
Target: 5'- aUCGCCAUaacgcuuaaaaaUACCGUCAG-GCaggauGCCGCg -3' miRNA: 3'- -GGUGGUA------------GUGGUAGUCuCGg----CGGCGg -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 4056 | 0.66 | 0.46564 |
Target: 5'- aCGCCGgucagcaguUCGUCAUCAGGGCgucaCCGCCa -3' miRNA: 3'- gGUGGU---------AGUGGUAGUCUCGgc--GGCGG- -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 4613 | 0.7 | 0.273368 |
Target: 5'- aCCGCCAcauccugCAgCAUCGGAuuGCUGCUGCg -3' miRNA: 3'- -GGUGGUa------GUgGUAGUCU--CGGCGGCGg -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 6332 | 0.67 | 0.406328 |
Target: 5'- -uGCUuUCACCGUCGauGUCGuCCGCCg -3' miRNA: 3'- ggUGGuAGUGGUAGUcuCGGC-GGCGG- -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 7211 | 0.66 | 0.47596 |
Target: 5'- gCCuCCgGUCGCUAUCAGcAGCUuuaccuguucugGCCGCa -3' miRNA: 3'- -GGuGG-UAGUGGUAGUC-UCGG------------CGGCGg -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 7575 | 0.68 | 0.36068 |
Target: 5'- cCCGCagagCGUgGCCGUCAGuuUUGUCGCCa -3' miRNA: 3'- -GGUG----GUAgUGGUAGUCucGGCGGCGG- -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 7825 | 1.12 | 0.000192 |
Target: 5'- gCCACCAUCACCAUCAGAGCCGCCGCCc -3' miRNA: 3'- -GGUGGUAGUGGUAGUCUCGGCGGCGG- -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 8837 | 0.68 | 0.35199 |
Target: 5'- -aACCccCGCCGcCGGAGCCGgucacCCGCCc -3' miRNA: 3'- ggUGGuaGUGGUaGUCUCGGC-----GGCGG- -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 8956 | 0.79 | 0.066664 |
Target: 5'- gUCGCUGUCACCGUCAGGGCguCGgCGCUg -3' miRNA: 3'- -GGUGGUAGUGGUAGUCUCG--GCgGCGG- -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 9032 | 0.66 | 0.486393 |
Target: 5'- uUCGCCAgcUCugCAcUCAGccGCCGaCGCCc -3' miRNA: 3'- -GGUGGU--AGugGU-AGUCu-CGGCgGCGG- -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 9375 | 0.69 | 0.303007 |
Target: 5'- aCACC-UCAUCGUCAcauuGCCGCCGgUa -3' miRNA: 3'- gGUGGuAGUGGUAGUcu--CGGCGGCgG- -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 9598 | 0.7 | 0.287888 |
Target: 5'- gCCACUGaaGCCAgUCAGuGCacauGCCGCCg -3' miRNA: 3'- -GGUGGUagUGGU-AGUCuCGg---CGGCGG- -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 9700 | 0.68 | 0.35199 |
Target: 5'- gCGCCGUCugCGUCGGcggauGCC-CUGCa -3' miRNA: 3'- gGUGGUAGugGUAGUCu----CGGcGGCGg -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 9880 | 0.7 | 0.250703 |
Target: 5'- aCCACCggCACCGuggcaguaacagaaUCAGaAGCCGUcaCGCUg -3' miRNA: 3'- -GGUGGuaGUGGU--------------AGUC-UCGGCG--GCGG- -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 10835 | 0.66 | 0.486393 |
Target: 5'- -uGCCuAUCAgUAUCAuGGCCGCaguGCCg -3' miRNA: 3'- ggUGG-UAGUgGUAGUcUCGGCGg--CGG- -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 10905 | 0.68 | 0.378505 |
Target: 5'- gCCugCGUCACCAUCucuGuGCUGUCa-- -3' miRNA: 3'- -GGugGUAGUGGUAGu--CuCGGCGGcgg -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 11869 | 0.71 | 0.221125 |
Target: 5'- aCCGuuAUCACUAcugcCGGAGCCgcaaagcuggcaGCCGCCa -3' miRNA: 3'- -GGUggUAGUGGUa---GUCUCGG------------CGGCGG- -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 17867 | 0.67 | 0.428509 |
Target: 5'- aCCACuccauugacagagCAUCAUCAUCAaGGCCgaggucuaccggugcGCUGCCg -3' miRNA: 3'- -GGUG-------------GUAGUGGUAGUcUCGG---------------CGGCGG- -5' |
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21042 | 3' | -57 | NC_004745.1 | + | 19535 | 0.69 | 0.295372 |
Target: 5'- uUCGCCAgCGCCAUauucagcgugacCGGcGuuGCCGCCu -3' miRNA: 3'- -GGUGGUaGUGGUA------------GUCuCggCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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