Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21042 | 3' | -57 | NC_004745.1 | + | 7211 | 0.66 | 0.47596 |
Target: 5'- gCCuCCgGUCGCUAUCAGcAGCUuuaccuguucugGCCGCa -3' miRNA: 3'- -GGuGG-UAGUGGUAGUC-UCGG------------CGGCGg -5' |
|||||||
21042 | 3' | -57 | NC_004745.1 | + | 6332 | 0.67 | 0.406328 |
Target: 5'- -uGCUuUCACCGUCGauGUCGuCCGCCg -3' miRNA: 3'- ggUGGuAGUGGUAGUcuCGGC-GGCGG- -5' |
|||||||
21042 | 3' | -57 | NC_004745.1 | + | 4613 | 0.7 | 0.273368 |
Target: 5'- aCCGCCAcauccugCAgCAUCGGAuuGCUGCUGCg -3' miRNA: 3'- -GGUGGUa------GUgGUAGUCU--CGGCGGCGg -5' |
|||||||
21042 | 3' | -57 | NC_004745.1 | + | 4056 | 0.66 | 0.46564 |
Target: 5'- aCGCCGgucagcaguUCGUCAUCAGGGCgucaCCGCCa -3' miRNA: 3'- gGUGGU---------AGUGGUAGUCUCGgc--GGCGG- -5' |
|||||||
21042 | 3' | -57 | NC_004745.1 | + | 3384 | 0.66 | 0.455437 |
Target: 5'- aUCGCCAUaacgcuuaaaaaUACCGUCAG-GCaggauGCCGCg -3' miRNA: 3'- -GGUGGUA------------GUGGUAGUCuCGg----CGGCGg -5' |
|||||||
21042 | 3' | -57 | NC_004745.1 | + | 68 | 0.67 | 0.425575 |
Target: 5'- gCACCAcCGCCAgcgcgCAGuGCUuuccCCGCCu -3' miRNA: 3'- gGUGGUaGUGGUa----GUCuCGGc---GGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home