miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21052 5' -55.3 NC_004745.1 + 4067 0.66 0.550339
Target:  5'- cGG-ACUGAcUGAcGCCGGUCAGCAg-- -3'
miRNA:   3'- -CCgUGGCU-ACUaCGGUCAGUCGUggu -5'
21052 5' -55.3 NC_004745.1 + 5170 0.66 0.550339
Target:  5'- aGCGCCacAUGAUGCgGGUCucGGCAgCGa -3'
miRNA:   3'- cCGUGGc-UACUACGgUCAG--UCGUgGU- -5'
21052 5' -55.3 NC_004745.1 + 177 0.66 0.539086
Target:  5'- aGGCGgCGAUGuucaGCCGuuGUCAGUGuCCAg -3'
miRNA:   3'- -CCGUgGCUACua--CGGU--CAGUCGU-GGU- -5'
21052 5' -55.3 NC_004745.1 + 1739 0.66 0.539086
Target:  5'- uGGCACCGccgGUGGUgGCCGGU-GGCAaauUCAg -3'
miRNA:   3'- -CCGUGGC---UACUA-CGGUCAgUCGU---GGU- -5'
21052 5' -55.3 NC_004745.1 + 6924 0.66 0.516826
Target:  5'- gGGUaucGCCGGuuaucaggugauUGAgauUGCCAuUCAGCGCCGc -3'
miRNA:   3'- -CCG---UGGCU------------ACU---ACGGUcAGUCGUGGU- -5'
21052 5' -55.3 NC_004745.1 + 1404 0.66 0.505834
Target:  5'- --aGCUGGUGAUGUCGGU-GGCGCUg -3'
miRNA:   3'- ccgUGGCUACUACGGUCAgUCGUGGu -5'
21052 5' -55.3 NC_004745.1 + 20855 0.66 0.505834
Target:  5'- uGGCACCGGUGGUuaUAuucCGGCgACCAg -3'
miRNA:   3'- -CCGUGGCUACUAcgGUca-GUCG-UGGU- -5'
21052 5' -55.3 NC_004745.1 + 1106 0.67 0.483089
Target:  5'- cGGCA--GAUGGUaugagccGCCGGUCAGCuuuACCGg -3'
miRNA:   3'- -CCGUggCUACUA-------CGGUCAGUCG---UGGU- -5'
21052 5' -55.3 NC_004745.1 + 9839 0.67 0.473492
Target:  5'- cGGUGCCGGUGGUuaUGGUgaaAGCAUCAa -3'
miRNA:   3'- -CCGUGGCUACUAcgGUCAg--UCGUGGU- -5'
21052 5' -55.3 NC_004745.1 + 20453 0.67 0.473492
Target:  5'- cGCACCGAUGGccGUCAuaaCGGCACUAc -3'
miRNA:   3'- cCGUGGCUACUa-CGGUca-GUCGUGGU- -5'
21052 5' -55.3 NC_004745.1 + 18396 0.67 0.452518
Target:  5'- cGGCACCGAUGcUGaCCgagcaggaGGUCGccGCGCUg -3'
miRNA:   3'- -CCGUGGCUACuAC-GG--------UCAGU--CGUGGu -5'
21052 5' -55.3 NC_004745.1 + 4281 0.67 0.442222
Target:  5'- uGGCAUCGGUGucaCCGGcuccaucgcCAGCACCAc -3'
miRNA:   3'- -CCGUGGCUACuacGGUCa--------GUCGUGGU- -5'
21052 5' -55.3 NC_004745.1 + 6690 0.67 0.442222
Target:  5'- gGGCAguUCGAcggcGGUGCCGuGUggCAGCACCAc -3'
miRNA:   3'- -CCGU--GGCUa---CUACGGU-CA--GUCGUGGU- -5'
21052 5' -55.3 NC_004745.1 + 21805 0.68 0.422036
Target:  5'- cGGCAgcCCGAcc-UGCCcGUCGGCAUCGu -3'
miRNA:   3'- -CCGU--GGCUacuACGGuCAGUCGUGGU- -5'
21052 5' -55.3 NC_004745.1 + 9613 0.68 0.379649
Target:  5'- cGGCA-CGAUGGgucagccacugaaGCCAGUCAGUGCaCAu -3'
miRNA:   3'- -CCGUgGCUACUa------------CGGUCAGUCGUG-GU- -5'
21052 5' -55.3 NC_004745.1 + 8298 0.69 0.356869
Target:  5'- gGGCGCUGGUGcaaccgGCgcacagcaucaggcaGGUCAGCACCGu -3'
miRNA:   3'- -CCGUGGCUACua----CGg--------------UCAGUCGUGGU- -5'
21052 5' -55.3 NC_004745.1 + 8474 0.69 0.355978
Target:  5'- gGGCGCUGAcUGAUGCC-GUCacGGUGCUg -3'
miRNA:   3'- -CCGUGGCU-ACUACGGuCAG--UCGUGGu -5'
21052 5' -55.3 NC_004745.1 + 18438 0.69 0.355978
Target:  5'- aGCAUCGGUGccgucAUGCgCGG-CAGCACCu -3'
miRNA:   3'- cCGUGGCUAC-----UACG-GUCaGUCGUGGu -5'
21052 5' -55.3 NC_004745.1 + 2910 0.69 0.338488
Target:  5'- cGGCACgGAaaaccccUGCCAGUacagCAGCGCCGc -3'
miRNA:   3'- -CCGUGgCUacu----ACGGUCA----GUCGUGGU- -5'
21052 5' -55.3 NC_004745.1 + 11977 0.71 0.282266
Target:  5'- cGGUGCCG--GAUGCCGGUCAGacgaaACUg -3'
miRNA:   3'- -CCGUGGCuaCUACGGUCAGUCg----UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.