miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21054 5' -52.9 NC_004745.1 + 10637 0.68 0.566785
Target:  5'- aCGGGcGGUGauGCUGGCCugUGC-AGCCg -3'
miRNA:   3'- -GCCCaUUAU--UGGUUGGugGCGgUCGG- -5'
21054 5' -52.9 NC_004745.1 + 1379 0.68 0.555358
Target:  5'- -------aGGCCAGCCGCagcgaggaaGCCAGCCa -3'
miRNA:   3'- gcccauuaUUGGUUGGUGg--------CGGUCGG- -5'
21054 5' -52.9 NC_004745.1 + 9197 0.68 0.543999
Target:  5'- gCGGGaAGUcGCCGAaaAUCGCCAGUg -3'
miRNA:   3'- -GCCCaUUAuUGGUUggUGGCGGUCGg -5'
21054 5' -52.9 NC_004745.1 + 19064 0.68 0.532717
Target:  5'- aGGGacugAAaAACCGuaucagugaaACCACCGCaCAGCUu -3'
miRNA:   3'- gCCCa---UUaUUGGU----------UGGUGGCG-GUCGG- -5'
21054 5' -52.9 NC_004745.1 + 18518 0.69 0.52152
Target:  5'- uCGGaGacaaaaAACCGACCACCuuaCCGGCCa -3'
miRNA:   3'- -GCC-Cauua--UUGGUUGGUGGc--GGUCGG- -5'
21054 5' -52.9 NC_004745.1 + 2135 0.69 0.52152
Target:  5'- uCGGGUGAacUGuUCAACCggggACgCGCCAGCg -3'
miRNA:   3'- -GCCCAUU--AUuGGUUGG----UG-GCGGUCGg -5'
21054 5' -52.9 NC_004745.1 + 3892 0.69 0.510416
Target:  5'- aGGGcgGAUGaaACCAGCCAggcauucacCCGCCugaaaaacAGCCu -3'
miRNA:   3'- gCCCa-UUAU--UGGUUGGU---------GGCGG--------UCGG- -5'
21054 5' -52.9 NC_004745.1 + 9799 0.69 0.499412
Target:  5'- uCGGGUucAUAcUCAAUCACCGCCccGUCg -3'
miRNA:   3'- -GCCCAu-UAUuGGUUGGUGGCGGu-CGG- -5'
21054 5' -52.9 NC_004745.1 + 22325 0.69 0.477729
Target:  5'- uCGGGUcuuuGGUGugUAACCACUuuGCCGuuacGCCg -3'
miRNA:   3'- -GCCCA----UUAUugGUUGGUGG--CGGU----CGG- -5'
21054 5' -52.9 NC_004745.1 + 8898 0.71 0.41569
Target:  5'- uCGGGcgGGUGACCGGCU-CCGgCGGCg -3'
miRNA:   3'- -GCCCa-UUAUUGGUUGGuGGCgGUCGg -5'
21054 5' -52.9 NC_004745.1 + 4033 0.71 0.386577
Target:  5'- aGGGc-GUcACC-GCCACCGCCGGUg -3'
miRNA:   3'- gCCCauUAuUGGuUGGUGGCGGUCGg -5'
21054 5' -52.9 NC_004745.1 + 17031 0.72 0.367929
Target:  5'- uGGGauacGGUuACCAguACCACCGCCAccgcguauGCCa -3'
miRNA:   3'- gCCCa---UUAuUGGU--UGGUGGCGGU--------CGG- -5'
21054 5' -52.9 NC_004745.1 + 10326 0.72 0.349024
Target:  5'- aCGGGcGAaugacggucacguUAACCGGCCagcacaacgacACCgGCCAGCCa -3'
miRNA:   3'- -GCCCaUU-------------AUUGGUUGG-----------UGG-CGGUCGG- -5'
21054 5' -52.9 NC_004745.1 + 20367 0.73 0.315784
Target:  5'- -cGGUGAUAACCGGCCAa-GCUacaaGGCCa -3'
miRNA:   3'- gcCCAUUAUUGGUUGGUggCGG----UCGG- -5'
21054 5' -52.9 NC_004745.1 + 22237 0.73 0.29188
Target:  5'- gCGGGUuauGGUGACCuGCggguuuuuuuUACCGCUGGCCg -3'
miRNA:   3'- -GCCCA---UUAUUGGuUG----------GUGGCGGUCGG- -5'
21054 5' -52.9 NC_004745.1 + 20978 0.74 0.248363
Target:  5'- aCGGGUGGUacugcgccgggGACaCAGCUugACCGCCAGUUa -3'
miRNA:   3'- -GCCCAUUA-----------UUG-GUUGG--UGGCGGUCGG- -5'
21054 5' -52.9 NC_004745.1 + 19960 0.75 0.22869
Target:  5'- uCGGGgagGAggccAGCuCAGCCGCCGCCGuGCUg -3'
miRNA:   3'- -GCCCa--UUa---UUG-GUUGGUGGCGGU-CGG- -5'
21054 5' -52.9 NC_004745.1 + 26717 1.13 0.000437
Target:  5'- uCGGGUAAUAACCAACCACCGCCAGCCa -3'
miRNA:   3'- -GCCCAUUAUUGGUUGGUGGCGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.