miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21054 5' -52.9 NC_004745.1 + 5498 0.67 0.624611
Target:  5'- aCGGGcAAUcuCCAGCgCACCGgCAauaucGCCg -3'
miRNA:   3'- -GCCCaUUAuuGGUUG-GUGGCgGU-----CGG- -5'
21054 5' -52.9 NC_004745.1 + 16706 0.67 0.624611
Target:  5'- -uGGUcagcGAUGGCCuguaacgaCGCCGCCAGCg -3'
miRNA:   3'- gcCCA----UUAUUGGuug-----GUGGCGGUCGg -5'
21054 5' -52.9 NC_004745.1 + 79 0.67 0.624611
Target:  5'- ----aAAUAAaauCCGcACCACCGCCAGCg -3'
miRNA:   3'- gcccaUUAUU---GGU-UGGUGGCGGUCGg -5'
21054 5' -52.9 NC_004745.1 + 8300 0.67 0.636242
Target:  5'- cCGGGcgcugGugCAACCGgCGCaCAGCa -3'
miRNA:   3'- -GCCCauua-UugGUUGGUgGCG-GUCGg -5'
21054 5' -52.9 NC_004745.1 + 9605 0.67 0.646706
Target:  5'- uGGGUc--AGCCAcugaaGCCagucagugcacauGCCGCCGGUCu -3'
miRNA:   3'- gCCCAuuaUUGGU-----UGG-------------UGGCGGUCGG- -5'
21054 5' -52.9 NC_004745.1 + 9902 0.67 0.647869
Target:  5'- gCGGGuUGAUGcuuucACCAuaACCACCGgCA-CCg -3'
miRNA:   3'- -GCCC-AUUAU-----UGGU--UGGUGGCgGUcGG- -5'
21054 5' -52.9 NC_004745.1 + 6835 0.68 0.589807
Target:  5'- gGGGUGAUGGgUucACCACCGgCAagcaccuuGCCg -3'
miRNA:   3'- gCCCAUUAUUgGu-UGGUGGCgGU--------CGG- -5'
21054 5' -52.9 NC_004745.1 + 1379 0.68 0.555358
Target:  5'- -------aGGCCAGCCGCagcgaggaaGCCAGCCa -3'
miRNA:   3'- gcccauuaUUGGUUGGUGg--------CGGUCGG- -5'
21054 5' -52.9 NC_004745.1 + 26717 1.13 0.000437
Target:  5'- uCGGGUAAUAACCAACCACCGCCAGCCa -3'
miRNA:   3'- -GCCCAUUAUUGGUUGGUGGCGGUCGG- -5'
21054 5' -52.9 NC_004745.1 + 22237 0.73 0.29188
Target:  5'- gCGGGUuauGGUGACCuGCggguuuuuuuUACCGCUGGCCg -3'
miRNA:   3'- -GCCCA---UUAUUGGuUG----------GUGGCGGUCGG- -5'
21054 5' -52.9 NC_004745.1 + 20367 0.73 0.315784
Target:  5'- -cGGUGAUAACCGGCCAa-GCUacaaGGCCa -3'
miRNA:   3'- gcCCAUUAUUGGUUGGUggCGG----UCGG- -5'
21054 5' -52.9 NC_004745.1 + 4033 0.71 0.386577
Target:  5'- aGGGc-GUcACC-GCCACCGCCGGUg -3'
miRNA:   3'- gCCCauUAuUGGuUGGUGGCGGUCGg -5'
21054 5' -52.9 NC_004745.1 + 8898 0.71 0.41569
Target:  5'- uCGGGcgGGUGACCGGCU-CCGgCGGCg -3'
miRNA:   3'- -GCCCa-UUAUUGGUUGGuGGCgGUCGg -5'
21054 5' -52.9 NC_004745.1 + 22325 0.69 0.477729
Target:  5'- uCGGGUcuuuGGUGugUAACCACUuuGCCGuuacGCCg -3'
miRNA:   3'- -GCCCA----UUAUugGUUGGUGG--CGGU----CGG- -5'
21054 5' -52.9 NC_004745.1 + 9799 0.69 0.499412
Target:  5'- uCGGGUucAUAcUCAAUCACCGCCccGUCg -3'
miRNA:   3'- -GCCCAu-UAUuGGUUGGUGGCGGu-CGG- -5'
21054 5' -52.9 NC_004745.1 + 18518 0.69 0.52152
Target:  5'- uCGGaGacaaaaAACCGACCACCuuaCCGGCCa -3'
miRNA:   3'- -GCC-Cauua--UUGGUUGGUGGc--GGUCGG- -5'
21054 5' -52.9 NC_004745.1 + 2135 0.69 0.52152
Target:  5'- uCGGGUGAacUGuUCAACCggggACgCGCCAGCg -3'
miRNA:   3'- -GCCCAUU--AUuGGUUGG----UG-GCGGUCGg -5'
21054 5' -52.9 NC_004745.1 + 3589 0.66 0.705511
Target:  5'- cCGGGUc---AUCggUgACgGCCAGCCc -3'
miRNA:   3'- -GCCCAuuauUGGuuGgUGgCGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.