miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21054 5' -52.9 NC_004745.1 + 19960 0.75 0.22869
Target:  5'- uCGGGgagGAggccAGCuCAGCCGCCGCCGuGCUg -3'
miRNA:   3'- -GCCCa--UUa---UUG-GUUGGUGGCGGU-CGG- -5'
21054 5' -52.9 NC_004745.1 + 27578 0.66 0.705511
Target:  5'- --cGUGAUGugCGugCgcGCCGCCAGgCa -3'
miRNA:   3'- gccCAUUAUugGUugG--UGGCGGUCgG- -5'
21054 5' -52.9 NC_004745.1 + 7869 0.66 0.682603
Target:  5'- cCGGcUGAUAugUAcgGCCuGCCGUCAGCg -3'
miRNA:   3'- -GCCcAUUAUugGU--UGG-UGGCGGUCGg -5'
21054 5' -52.9 NC_004745.1 + 16943 0.67 0.635079
Target:  5'- gGGGUuGUAaaACCAuuuccgagggaaaGCCuACCGCCAgaauuucaGCCa -3'
miRNA:   3'- gCCCAuUAU--UGGU-------------UGG-UGGCGGU--------CGG- -5'
21054 5' -52.9 NC_004745.1 + 9027 0.68 0.594433
Target:  5'- uCGGGUGAUGGCacagaaagccccggaCGGCaCACCcuacgcGCCAcGCCa -3'
miRNA:   3'- -GCCCAUUAUUG---------------GUUG-GUGG------CGGU-CGG- -5'
21054 5' -52.9 NC_004745.1 + 5496 0.68 0.589807
Target:  5'- cCGGGUAAacACCGccgcACC-CCGCCGuaCa -3'
miRNA:   3'- -GCCCAUUauUGGU----UGGuGGCGGUcgG- -5'
21054 5' -52.9 NC_004745.1 + 4287 0.68 0.578271
Target:  5'- -cGGUGuc-ACCGgcuCCAUCGCCAGCa -3'
miRNA:   3'- gcCCAUuauUGGUu--GGUGGCGGUCGg -5'
21054 5' -52.9 NC_004745.1 + 1743 0.68 0.578271
Target:  5'- aCGGGUcGUAACCAAuCCAUa-CCGGgCg -3'
miRNA:   3'- -GCCCAuUAUUGGUU-GGUGgcGGUCgG- -5'
21054 5' -52.9 NC_004745.1 + 3991 0.68 0.578271
Target:  5'- gGGGUgacgcccuGAUGACgAACUGCUGaCCGGCg -3'
miRNA:   3'- gCCCA--------UUAUUGgUUGGUGGC-GGUCGg -5'
21054 5' -52.9 NC_004745.1 + 10637 0.68 0.566785
Target:  5'- aCGGGcGGUGauGCUGGCCugUGC-AGCCg -3'
miRNA:   3'- -GCCCaUUAU--UGGUUGGugGCGgUCGG- -5'
21054 5' -52.9 NC_004745.1 + 20978 0.74 0.248363
Target:  5'- aCGGGUGGUacugcgccgggGACaCAGCUugACCGCCAGUUa -3'
miRNA:   3'- -GCCCAUUA-----------UUG-GUUGG--UGGCGGUCGG- -5'
21054 5' -52.9 NC_004745.1 + 10326 0.72 0.349024
Target:  5'- aCGGGcGAaugacggucacguUAACCGGCCagcacaacgacACCgGCCAGCCa -3'
miRNA:   3'- -GCCCaUU-------------AUUGGUUGG-----------UGG-CGGUCGG- -5'
21054 5' -52.9 NC_004745.1 + 17031 0.72 0.367929
Target:  5'- uGGGauacGGUuACCAguACCACCGCCAccgcguauGCCa -3'
miRNA:   3'- gCCCa---UUAuUGGU--UGGUGGCGGU--------CGG- -5'
21054 5' -52.9 NC_004745.1 + 3892 0.69 0.510416
Target:  5'- aGGGcgGAUGaaACCAGCCAggcauucacCCGCCugaaaaacAGCCu -3'
miRNA:   3'- gCCCa-UUAU--UGGUUGGU---------GGCGG--------UCGG- -5'
21054 5' -52.9 NC_004745.1 + 19064 0.68 0.532717
Target:  5'- aGGGacugAAaAACCGuaucagugaaACCACCGCaCAGCUu -3'
miRNA:   3'- gCCCa---UUaUUGGU----------UGGUGGCG-GUCGG- -5'
21054 5' -52.9 NC_004745.1 + 9197 0.68 0.543999
Target:  5'- gCGGGaAGUcGCCGAaaAUCGCCAGUg -3'
miRNA:   3'- -GCCCaUUAuUGGUUggUGGCGGUCGg -5'
21054 5' -52.9 NC_004745.1 + 6620 0.68 0.566785
Target:  5'- uGGGUGugGUGcuGCCAcacggcACCGCCGUCGaacuGCCc -3'
miRNA:   3'- gCCCAU--UAU--UGGU------UGGUGGCGGU----CGG- -5'
21054 5' -52.9 NC_004745.1 + 3589 0.66 0.705511
Target:  5'- cCGGGUc---AUCggUgACgGCCAGCCc -3'
miRNA:   3'- -GCCCAuuauUGGuuGgUGgCGGUCGG- -5'
21054 5' -52.9 NC_004745.1 + 22237 0.73 0.29188
Target:  5'- gCGGGUuauGGUGACCuGCggguuuuuuuUACCGCUGGCCg -3'
miRNA:   3'- -GCCCA---UUAUUGGuUG----------GUGGCGGUCGG- -5'
21054 5' -52.9 NC_004745.1 + 20367 0.73 0.315784
Target:  5'- -cGGUGAUAACCGGCCAa-GCUacaaGGCCa -3'
miRNA:   3'- gcCCAUUAUUGGUUGGUggCGG----UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.