Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21054 | 5' | -52.9 | NC_004745.1 | + | 79 | 0.67 | 0.624611 |
Target: 5'- ----aAAUAAaauCCGcACCACCGCCAGCg -3' miRNA: 3'- gcccaUUAUU---GGU-UGGUGGCGGUCGg -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 1379 | 0.68 | 0.555358 |
Target: 5'- -------aGGCCAGCCGCagcgaggaaGCCAGCCa -3' miRNA: 3'- gcccauuaUUGGUUGGUGg--------CGGUCGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 1743 | 0.68 | 0.578271 |
Target: 5'- aCGGGUcGUAACCAAuCCAUa-CCGGgCg -3' miRNA: 3'- -GCCCAuUAUUGGUU-GGUGgcGGUCgG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 2135 | 0.69 | 0.52152 |
Target: 5'- uCGGGUGAacUGuUCAACCggggACgCGCCAGCg -3' miRNA: 3'- -GCCCAUU--AUuGGUUGG----UG-GCGGUCGg -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 3589 | 0.66 | 0.705511 |
Target: 5'- cCGGGUc---AUCggUgACgGCCAGCCc -3' miRNA: 3'- -GCCCAuuauUGGuuGgUGgCGGUCGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 3892 | 0.69 | 0.510416 |
Target: 5'- aGGGcgGAUGaaACCAGCCAggcauucacCCGCCugaaaaacAGCCu -3' miRNA: 3'- gCCCa-UUAU--UGGUUGGU---------GGCGG--------UCGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 3991 | 0.68 | 0.578271 |
Target: 5'- gGGGUgacgcccuGAUGACgAACUGCUGaCCGGCg -3' miRNA: 3'- gCCCA--------UUAUUGgUUGGUGGC-GGUCGg -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 4033 | 0.71 | 0.386577 |
Target: 5'- aGGGc-GUcACC-GCCACCGCCGGUg -3' miRNA: 3'- gCCCauUAuUGGuUGGUGGCGGUCGg -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 4287 | 0.68 | 0.578271 |
Target: 5'- -cGGUGuc-ACCGgcuCCAUCGCCAGCa -3' miRNA: 3'- gcCCAUuauUGGUu--GGUGGCGGUCGg -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 5496 | 0.68 | 0.589807 |
Target: 5'- cCGGGUAAacACCGccgcACC-CCGCCGuaCa -3' miRNA: 3'- -GCCCAUUauUGGU----UGGuGGCGGUcgG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 5498 | 0.67 | 0.624611 |
Target: 5'- aCGGGcAAUcuCCAGCgCACCGgCAauaucGCCg -3' miRNA: 3'- -GCCCaUUAuuGGUUG-GUGGCgGU-----CGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 6620 | 0.68 | 0.566785 |
Target: 5'- uGGGUGugGUGcuGCCAcacggcACCGCCGUCGaacuGCCc -3' miRNA: 3'- gCCCAU--UAU--UGGU------UGGUGGCGGU----CGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 6835 | 0.68 | 0.589807 |
Target: 5'- gGGGUGAUGGgUucACCACCGgCAagcaccuuGCCg -3' miRNA: 3'- gCCCAUUAUUgGu-UGGUGGCgGU--------CGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 7609 | 0.67 | 0.596748 |
Target: 5'- gCGGGUAAaucagggacaguGCCGGCauCAgCGCCAGCg -3' miRNA: 3'- -GCCCAUUau----------UGGUUG--GUgGCGGUCGg -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 7869 | 0.66 | 0.682603 |
Target: 5'- cCGGcUGAUAugUAcgGCCuGCCGUCAGCg -3' miRNA: 3'- -GCCcAUUAUugGU--UGG-UGGCGGUCGg -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 8300 | 0.67 | 0.636242 |
Target: 5'- cCGGGcgcugGugCAACCGgCGCaCAGCa -3' miRNA: 3'- -GCCCauua-UugGUUGGUgGCG-GUCGg -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 8898 | 0.71 | 0.41569 |
Target: 5'- uCGGGcgGGUGACCGGCU-CCGgCGGCg -3' miRNA: 3'- -GCCCa-UUAUUGGUUGGuGGCgGUCGg -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 9027 | 0.68 | 0.594433 |
Target: 5'- uCGGGUGAUGGCacagaaagccccggaCGGCaCACCcuacgcGCCAcGCCa -3' miRNA: 3'- -GCCCAUUAUUG---------------GUUG-GUGG------CGGU-CGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 9197 | 0.68 | 0.543999 |
Target: 5'- gCGGGaAGUcGCCGAaaAUCGCCAGUg -3' miRNA: 3'- -GCCCaUUAuUGGUUggUGGCGGUCGg -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 9605 | 0.67 | 0.646706 |
Target: 5'- uGGGUc--AGCCAcugaaGCCagucagugcacauGCCGCCGGUCu -3' miRNA: 3'- gCCCAuuaUUGGU-----UGG-------------UGGCGGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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