Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21054 | 5' | -52.9 | NC_004745.1 | + | 26717 | 1.13 | 0.000437 |
Target: 5'- uCGGGUAAUAACCAACCACCGCCAGCCa -3' miRNA: 3'- -GCCCAUUAUUGGUUGGUGGCGGUCGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 19960 | 0.75 | 0.22869 |
Target: 5'- uCGGGgagGAggccAGCuCAGCCGCCGCCGuGCUg -3' miRNA: 3'- -GCCCa--UUa---UUG-GUUGGUGGCGGU-CGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 20978 | 0.74 | 0.248363 |
Target: 5'- aCGGGUGGUacugcgccgggGACaCAGCUugACCGCCAGUUa -3' miRNA: 3'- -GCCCAUUA-----------UUG-GUUGG--UGGCGGUCGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 22237 | 0.73 | 0.29188 |
Target: 5'- gCGGGUuauGGUGACCuGCggguuuuuuuUACCGCUGGCCg -3' miRNA: 3'- -GCCCA---UUAUUGGuUG----------GUGGCGGUCGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 20367 | 0.73 | 0.315784 |
Target: 5'- -cGGUGAUAACCGGCCAa-GCUacaaGGCCa -3' miRNA: 3'- gcCCAUUAUUGGUUGGUggCGG----UCGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 10326 | 0.72 | 0.349024 |
Target: 5'- aCGGGcGAaugacggucacguUAACCGGCCagcacaacgacACCgGCCAGCCa -3' miRNA: 3'- -GCCCaUU-------------AUUGGUUGG-----------UGG-CGGUCGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 17031 | 0.72 | 0.367929 |
Target: 5'- uGGGauacGGUuACCAguACCACCGCCAccgcguauGCCa -3' miRNA: 3'- gCCCa---UUAuUGGU--UGGUGGCGGU--------CGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 4033 | 0.71 | 0.386577 |
Target: 5'- aGGGc-GUcACC-GCCACCGCCGGUg -3' miRNA: 3'- gCCCauUAuUGGuUGGUGGCGGUCGg -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 8898 | 0.71 | 0.41569 |
Target: 5'- uCGGGcgGGUGACCGGCU-CCGgCGGCg -3' miRNA: 3'- -GCCCa-UUAUUGGUUGGuGGCgGUCGg -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 22325 | 0.69 | 0.477729 |
Target: 5'- uCGGGUcuuuGGUGugUAACCACUuuGCCGuuacGCCg -3' miRNA: 3'- -GCCCA----UUAUugGUUGGUGG--CGGU----CGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 9799 | 0.69 | 0.499412 |
Target: 5'- uCGGGUucAUAcUCAAUCACCGCCccGUCg -3' miRNA: 3'- -GCCCAu-UAUuGGUUGGUGGCGGu-CGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 3892 | 0.69 | 0.510416 |
Target: 5'- aGGGcgGAUGaaACCAGCCAggcauucacCCGCCugaaaaacAGCCu -3' miRNA: 3'- gCCCa-UUAU--UGGUUGGU---------GGCGG--------UCGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 2135 | 0.69 | 0.52152 |
Target: 5'- uCGGGUGAacUGuUCAACCggggACgCGCCAGCg -3' miRNA: 3'- -GCCCAUU--AUuGGUUGG----UG-GCGGUCGg -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 18518 | 0.69 | 0.52152 |
Target: 5'- uCGGaGacaaaaAACCGACCACCuuaCCGGCCa -3' miRNA: 3'- -GCC-Cauua--UUGGUUGGUGGc--GGUCGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 19064 | 0.68 | 0.532717 |
Target: 5'- aGGGacugAAaAACCGuaucagugaaACCACCGCaCAGCUu -3' miRNA: 3'- gCCCa---UUaUUGGU----------UGGUGGCG-GUCGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 9197 | 0.68 | 0.543999 |
Target: 5'- gCGGGaAGUcGCCGAaaAUCGCCAGUg -3' miRNA: 3'- -GCCCaUUAuUGGUUggUGGCGGUCGg -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 1379 | 0.68 | 0.555358 |
Target: 5'- -------aGGCCAGCCGCagcgaggaaGCCAGCCa -3' miRNA: 3'- gcccauuaUUGGUUGGUGg--------CGGUCGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 6620 | 0.68 | 0.566785 |
Target: 5'- uGGGUGugGUGcuGCCAcacggcACCGCCGUCGaacuGCCc -3' miRNA: 3'- gCCCAU--UAU--UGGU------UGGUGGCGGU----CGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 10637 | 0.68 | 0.566785 |
Target: 5'- aCGGGcGGUGauGCUGGCCugUGC-AGCCg -3' miRNA: 3'- -GCCCaUUAU--UGGUUGGugGCGgUCGG- -5' |
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21054 | 5' | -52.9 | NC_004745.1 | + | 3991 | 0.68 | 0.578271 |
Target: 5'- gGGGUgacgcccuGAUGACgAACUGCUGaCCGGCg -3' miRNA: 3'- gCCCA--------UUAUUGgUUGGUGGC-GGUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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