Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21057 | 5' | -43.2 | NC_004745.1 | + | 19722 | 0.67 | 0.995116 |
Target: 5'- gGCGCUGc---AUGAUGCAaAAAUCACa -3' miRNA: 3'- -CGCGACuauaUGUUGCGU-UUUAGUGg -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 19483 | 0.69 | 0.980159 |
Target: 5'- aCGCUGA-AUAUGGCGCuggcGAAcCGCCg -3' miRNA: 3'- cGCGACUaUAUGUUGCGu---UUUaGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 21636 | 0.68 | 0.984938 |
Target: 5'- aUGCUGAUGcuCGACaGCAGGgauAUUACCg -3' miRNA: 3'- cGCGACUAUauGUUG-CGUUU---UAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 22568 | 0.68 | 0.986971 |
Target: 5'- cGUGCUGAUAUuu-ACaCGGAAaCACCg -3' miRNA: 3'- -CGCGACUAUAuguUGcGUUUUaGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 4619 | 0.68 | 0.990397 |
Target: 5'- cGCGCgUGAUGa-----GCAAGGUCACUg -3' miRNA: 3'- -CGCG-ACUAUauguugCGUUUUAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 28147 | 0.68 | 0.990397 |
Target: 5'- gGUGCUGcgggGUAUAuCGCGAAAUaCAUCu -3' miRNA: 3'- -CGCGACua--UAUGUuGCGUUUUA-GUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 5689 | 0.68 | 0.991821 |
Target: 5'- aCGCUGGUgAUGCcgcaggGGCGCuGGcgCACCu -3' miRNA: 3'- cGCGACUA-UAUG------UUGCGuUUuaGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 7333 | 0.67 | 0.993073 |
Target: 5'- uGCGCUGGaugACAuccgggcgggACGCAuugAGcgCGCCa -3' miRNA: 3'- -CGCGACUauaUGU----------UGCGU---UUuaGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 21489 | 0.67 | 0.994063 |
Target: 5'- cGCGCUuuauggcgauaucGGUAaACAG-GCGGAAUCGCUc -3' miRNA: 3'- -CGCGA-------------CUAUaUGUUgCGUUUUAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 5635 | 0.69 | 0.980159 |
Target: 5'- uGC-CUGAUgaaGUGC-GCGCAaagcugcacaAAAUCACCg -3' miRNA: 3'- -CGcGACUA---UAUGuUGCGU----------UUUAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 19650 | 0.69 | 0.979894 |
Target: 5'- uGCGCUGAccUAUGCcgcaccuGugGCAAAAaauGCCg -3' miRNA: 3'- -CGCGACU--AUAUG-------UugCGUUUUag-UGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 26420 | 0.7 | 0.967352 |
Target: 5'- uGCGCUGGUuUGCGAagaGUguGAUaCGCCa -3' miRNA: 3'- -CGCGACUAuAUGUUg--CGuuUUA-GUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 2822 | 0.75 | 0.813023 |
Target: 5'- -gGCUGAUGgggGCAACGCu--GUC-CCa -3' miRNA: 3'- cgCGACUAUa--UGUUGCGuuuUAGuGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 3393 | 0.74 | 0.833814 |
Target: 5'- gGCGCUGAaagGCAaauggGCGCuguuugcgAAAAUCACCc -3' miRNA: 3'- -CGCGACUauaUGU-----UGCG--------UUUUAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 17078 | 0.73 | 0.872014 |
Target: 5'- uGCGCUGGgucUGCG-CGCuAAAAUCgACCa -3' miRNA: 3'- -CGCGACUau-AUGUuGCG-UUUUAG-UGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 8979 | 0.72 | 0.919589 |
Target: 5'- gGCGCUGA-GUGCAGagcugGCGAAgcGUCugCg -3' miRNA: 3'- -CGCGACUaUAUGUUg----CGUUU--UAGugG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 7836 | 0.71 | 0.932646 |
Target: 5'- cGCGCUGAUuUAUcuCGUGGcGUCGCUg -3' miRNA: 3'- -CGCGACUAuAUGuuGCGUUuUAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 8009 | 0.71 | 0.949573 |
Target: 5'- uCGCUGG---ACAGgGCGAAuaacGUCGCCa -3' miRNA: 3'- cGCGACUauaUGUUgCGUUU----UAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 1255 | 0.7 | 0.959124 |
Target: 5'- gGUGCUGAUAc-CGGCGguGAGUgGCUc -3' miRNA: 3'- -CGCGACUAUauGUUGCguUUUAgUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 16590 | 0.7 | 0.966971 |
Target: 5'- gGUGCUGAUuaccaauGUGCAgaGCGCAAuugcAAagGCCg -3' miRNA: 3'- -CGCGACUA-------UAUGU--UGCGUU----UUagUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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