Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21057 | 5' | -43.2 | NC_004745.1 | + | 1255 | 0.7 | 0.959124 |
Target: 5'- gGUGCUGAUAc-CGGCGguGAGUgGCUc -3' miRNA: 3'- -CGCGACUAUauGUUGCguUUUAgUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 2822 | 0.75 | 0.813023 |
Target: 5'- -gGCUGAUGgggGCAACGCu--GUC-CCa -3' miRNA: 3'- cgCGACUAUa--UGUUGCGuuuUAGuGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 3393 | 0.74 | 0.833814 |
Target: 5'- gGCGCUGAaagGCAaauggGCGCuguuugcgAAAAUCACCc -3' miRNA: 3'- -CGCGACUauaUGU-----UGCG--------UUUUAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 4619 | 0.68 | 0.990397 |
Target: 5'- cGCGCgUGAUGa-----GCAAGGUCACUg -3' miRNA: 3'- -CGCG-ACUAUauguugCGUUUUAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 5313 | 0.7 | 0.96257 |
Target: 5'- uGCGCUGGUcUGCGGCGagcuua-ACCa -3' miRNA: 3'- -CGCGACUAuAUGUUGCguuuuagUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 5366 | 0.66 | 0.99664 |
Target: 5'- cGUGCUGGa--GCAGgGCAAAGgugCACa -3' miRNA: 3'- -CGCGACUauaUGUUgCGUUUUa--GUGg -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 5635 | 0.69 | 0.980159 |
Target: 5'- uGC-CUGAUgaaGUGC-GCGCAaagcugcacaAAAUCACCg -3' miRNA: 3'- -CGcGACUA---UAUGuUGCGU----------UUUAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 5689 | 0.68 | 0.991821 |
Target: 5'- aCGCUGGUgAUGCcgcaggGGCGCuGGcgCACCu -3' miRNA: 3'- cGCGACUA-UAUG------UUGCGuUUuaGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 6855 | 0.69 | 0.982672 |
Target: 5'- uGCGCccGAUAaACAGaCGCGGGGugauggguUCACCa -3' miRNA: 3'- -CGCGa-CUAUaUGUU-GCGUUUU--------AGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 6996 | 0.72 | 0.919589 |
Target: 5'- gGCGCUGA-----AugGCAAucucAAUCACCu -3' miRNA: 3'- -CGCGACUauaugUugCGUU----UUAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 7070 | 0.66 | 0.99664 |
Target: 5'- cCGCUGAcGaaaaaccggggcUAUGACGUGAuAGUCACCg -3' miRNA: 3'- cGCGACUaU------------AUGUUGCGUU-UUAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 7263 | 0.66 | 0.997749 |
Target: 5'- aGCuGCUGAUA-GCGAC-CGGAGgccguggauuuuUCACCg -3' miRNA: 3'- -CG-CGACUAUaUGUUGcGUUUU------------AGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 7333 | 0.67 | 0.993073 |
Target: 5'- uGCGCUGGaugACAuccgggcgggACGCAuugAGcgCGCCa -3' miRNA: 3'- -CGCGACUauaUGU----------UGCGU---UUuaGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 7836 | 0.71 | 0.932646 |
Target: 5'- cGCGCUGAUuUAUcuCGUGGcGUCGCUg -3' miRNA: 3'- -CGCGACUAuAUGuuGCGUUuUAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 8009 | 0.71 | 0.949573 |
Target: 5'- uCGCUGG---ACAGgGCGAAuaacGUCGCCa -3' miRNA: 3'- cGCGACUauaUGUUgCGUUU----UAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 8297 | 0.71 | 0.938641 |
Target: 5'- gGCGCUGGUGcaacCGGCGCAcagcaucaggcAGGUCAgCa -3' miRNA: 3'- -CGCGACUAUau--GUUGCGU-----------UUUAGUgG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 8979 | 0.72 | 0.919589 |
Target: 5'- gGCGCUGA-GUGCAGagcugGCGAAgcGUCugCg -3' miRNA: 3'- -CGCGACUaUAUGUUg----CGUUU--UAGugG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 9748 | 0.68 | 0.991821 |
Target: 5'- cCGCcGAcgcagACGGCGCGGGguuAUCGCCg -3' miRNA: 3'- cGCGaCUaua--UGUUGCGUUU---UAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 11557 | 0.68 | 0.991821 |
Target: 5'- uCGCgGAUA-ACGGCGCGuuuuGUCGCUu -3' miRNA: 3'- cGCGaCUAUaUGUUGCGUuu--UAGUGG- -5' |
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21057 | 5' | -43.2 | NC_004745.1 | + | 12282 | 0.75 | 0.802253 |
Target: 5'- aCGgUGAUG-GCGACGCAGGAUUACg -3' miRNA: 3'- cGCgACUAUaUGUUGCGUUUUAGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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