miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21057 5' -43.2 NC_004745.1 + 19722 0.67 0.995116
Target:  5'- gGCGCUGc---AUGAUGCAaAAAUCACa -3'
miRNA:   3'- -CGCGACuauaUGUUGCGU-UUUAGUGg -5'
21057 5' -43.2 NC_004745.1 + 19483 0.69 0.980159
Target:  5'- aCGCUGA-AUAUGGCGCuggcGAAcCGCCg -3'
miRNA:   3'- cGCGACUaUAUGUUGCGu---UUUaGUGG- -5'
21057 5' -43.2 NC_004745.1 + 21636 0.68 0.984938
Target:  5'- aUGCUGAUGcuCGACaGCAGGgauAUUACCg -3'
miRNA:   3'- cGCGACUAUauGUUG-CGUUU---UAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 22568 0.68 0.986971
Target:  5'- cGUGCUGAUAUuu-ACaCGGAAaCACCg -3'
miRNA:   3'- -CGCGACUAUAuguUGcGUUUUaGUGG- -5'
21057 5' -43.2 NC_004745.1 + 4619 0.68 0.990397
Target:  5'- cGCGCgUGAUGa-----GCAAGGUCACUg -3'
miRNA:   3'- -CGCG-ACUAUauguugCGUUUUAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 28147 0.68 0.990397
Target:  5'- gGUGCUGcgggGUAUAuCGCGAAAUaCAUCu -3'
miRNA:   3'- -CGCGACua--UAUGUuGCGUUUUA-GUGG- -5'
21057 5' -43.2 NC_004745.1 + 5689 0.68 0.991821
Target:  5'- aCGCUGGUgAUGCcgcaggGGCGCuGGcgCACCu -3'
miRNA:   3'- cGCGACUA-UAUG------UUGCGuUUuaGUGG- -5'
21057 5' -43.2 NC_004745.1 + 7333 0.67 0.993073
Target:  5'- uGCGCUGGaugACAuccgggcgggACGCAuugAGcgCGCCa -3'
miRNA:   3'- -CGCGACUauaUGU----------UGCGU---UUuaGUGG- -5'
21057 5' -43.2 NC_004745.1 + 21489 0.67 0.994063
Target:  5'- cGCGCUuuauggcgauaucGGUAaACAG-GCGGAAUCGCUc -3'
miRNA:   3'- -CGCGA-------------CUAUaUGUUgCGUUUUAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 5635 0.69 0.980159
Target:  5'- uGC-CUGAUgaaGUGC-GCGCAaagcugcacaAAAUCACCg -3'
miRNA:   3'- -CGcGACUA---UAUGuUGCGU----------UUUAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 19650 0.69 0.979894
Target:  5'- uGCGCUGAccUAUGCcgcaccuGugGCAAAAaauGCCg -3'
miRNA:   3'- -CGCGACU--AUAUG-------UugCGUUUUag-UGG- -5'
21057 5' -43.2 NC_004745.1 + 26420 0.7 0.967352
Target:  5'- uGCGCUGGUuUGCGAagaGUguGAUaCGCCa -3'
miRNA:   3'- -CGCGACUAuAUGUUg--CGuuUUA-GUGG- -5'
21057 5' -43.2 NC_004745.1 + 2822 0.75 0.813023
Target:  5'- -gGCUGAUGgggGCAACGCu--GUC-CCa -3'
miRNA:   3'- cgCGACUAUa--UGUUGCGuuuUAGuGG- -5'
21057 5' -43.2 NC_004745.1 + 3393 0.74 0.833814
Target:  5'- gGCGCUGAaagGCAaauggGCGCuguuugcgAAAAUCACCc -3'
miRNA:   3'- -CGCGACUauaUGU-----UGCG--------UUUUAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 17078 0.73 0.872014
Target:  5'- uGCGCUGGgucUGCG-CGCuAAAAUCgACCa -3'
miRNA:   3'- -CGCGACUau-AUGUuGCG-UUUUAG-UGG- -5'
21057 5' -43.2 NC_004745.1 + 8979 0.72 0.919589
Target:  5'- gGCGCUGA-GUGCAGagcugGCGAAgcGUCugCg -3'
miRNA:   3'- -CGCGACUaUAUGUUg----CGUUU--UAGugG- -5'
21057 5' -43.2 NC_004745.1 + 7836 0.71 0.932646
Target:  5'- cGCGCUGAUuUAUcuCGUGGcGUCGCUg -3'
miRNA:   3'- -CGCGACUAuAUGuuGCGUUuUAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 8009 0.71 0.949573
Target:  5'- uCGCUGG---ACAGgGCGAAuaacGUCGCCa -3'
miRNA:   3'- cGCGACUauaUGUUgCGUUU----UAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 1255 0.7 0.959124
Target:  5'- gGUGCUGAUAc-CGGCGguGAGUgGCUc -3'
miRNA:   3'- -CGCGACUAUauGUUGCguUUUAgUGG- -5'
21057 5' -43.2 NC_004745.1 + 16590 0.7 0.966971
Target:  5'- gGUGCUGAUuaccaauGUGCAgaGCGCAAuugcAAagGCCg -3'
miRNA:   3'- -CGCGACUA-------UAUGU--UGCGUU----UUagUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.